HHsearch alignment for GI: 254780129 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=99.79 E-value=1.9e-18 Score=125.13 Aligned_cols=161 Identities=20% Similarity=0.275 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 48999999999967981999689998899999-999999740-8994899723310137889999851553460699861
Q gi|254780129|r 6 KPHQIVMVNWLLSHDRCALWASMGSGKTVSVL-FALSTIKIL-DPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLI 83 (220)
Q Consensus 6 rp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai-~~~~~~~~~-~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~ 83 (220)
T Consensus 1 ~~~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~~~~ 80 (167)
T pfam00270 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVALLY 80 (167)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 94599999999769978998899975899999999999874778987999906088888999886432102676404641
Q ss_pred CCCC--CCCCCCCCCCCEEEECHHHHHCCCCCC-CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 1210--112234567662786566731000000-0024720000251220136543320369999999851379879983
Q gi|254780129|r 84 GSER--QRIKALNTPAHLYIINFENIPWLVKMK-LDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIEL 160 (220)
Q Consensus 84 ~~~~--~~~~~~~~~~~~~i~~~~~l~~~~~~~-~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~L 160 (220)
T Consensus 81 g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~--~~g~~~~~il~~l~--~~~q~v~~ 156 (167)
T pfam00270 81 GGDSPKEQLRKLKKGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQ--GFGDDLEEILRRLP--PKRQILLL 156 (167)
T ss_pred CCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCC--CHHHHHHHHHHHCC--CCCCEEEE
T ss_conf 786178898764057707994789999999803312110038998808867335--82999999998579--99978999
Q ss_pred CCCCCCCCHHH
Q ss_conf 16532488899
Q gi|254780129|r 161 TGTPSPNGLID 171 (220)
Q Consensus 161 TgTPi~n~~~e 171 (220)
T Consensus 157 SAT~~-~~~~~ 166 (167)
T pfam00270 157 SATLP-RNVED 166 (167)
T ss_pred ECCCC-HHHHH
T ss_conf 72699-77854