HHsearch alignment for GI: 254780129 and conserved domain: pfam02399
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=98.05 E-value=4.6e-05 Score=48.21 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=75.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHC---CCCCEEEE-ECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 999689998899999999999740---89948997-23310137889999851553460699861121011223456766
Q gi|254780129|r 23 ALWASMGSGKTVSVLFALSTIKIL---DPRPVLII-APLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAH 98 (220)
Q Consensus 23 ~l~~~~G~GKT~~ai~~~~~~~~~---~~~~~LIi-~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (220)
T Consensus 53 VVRAPMGSGKTTA---Li~wL~~~L~~~d~SvLVVSCRRSF-T~tL~~Rf~~-aGL~gFvtY~~---s~~y-im~~~~f~ 123 (829)
T pfam02399 53 VVRAPMGSGKTTA---LIEWLRAALDSPDTSVLVVSCRRSF-TQTLLDRFND-AGLTGFVTYLD---STDY-VMNGRPFR 123 (829)
T ss_pred EEECCCCCCHHHH---HHHHHHHHHCCCCCEEEEEECHHHH-HHHHHHHHHH-CCCCCCEEEEE---CCCE-EECCCCCC
T ss_conf 9976888871899---9999999737866549999701678-9999999986-69865135750---4434-76787532
Q ss_pred EEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCC-CCCCCHHHH--HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 27865667310000000024720000251220136-543320369--999999851379879983165324888999999
Q gi|254780129|r 99 LYIINFENIPWLVKMKLDHWDFATIVVDESTKLKS-FRTHQGTKQ--TRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQ 175 (220)
Q Consensus 99 ~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn-~~~~~~~k~--~k~l~~~~~~~~~~~l~LTgTPi~n~~~el~~l 175 (220)
T Consensus 124 RLiVQiESLHRV~~~ll~--~YDvLILDEVMSti~QlySpTM~~L~~VDall~~LLr~CprIIAMDAT-~NaqlVd~--- 197 (829)
T pfam02399 124 RLIVQIESLHRVDENLLN--NYDVLILDEVMSTIGQLYSPTMRRLKEVDALLLRLLRNCPRIIAMDAT-VNAQLVDF--- 197 (829)
T ss_pred EEEEEEECCCCCCHHHCC--CCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEECCH-HHHHHHHH---
T ss_conf 368885111138833425--667798577888888760688899999999999998549827984020-42899999---
Q ss_pred HHHHCCC
Q ss_conf 9982888
Q gi|254780129|r 176 IWFLDKG 182 (220)
Q Consensus 176 l~~l~p~ 182 (220)
T Consensus 198 La~lRG~ 204 (829)
T pfam02399 198 LAGLRGE 204 (829)
T ss_pred HHHHCCC
T ss_conf 9972688