HHsearch alignment for GI: 254780129 and conserved domain: pfam03354
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=95.44 E-value=0.17 Score=27.77 Aligned_cols=161 Identities=12% Similarity=0.088 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHH----C-----CCCEEEECCCCCHHHHHHHHH--HHHHHCCCC-CEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 899999999996----7-----981999689998899999999--999740899-4899723310137889999851553
Q gi|254780129|r 7 PHQIVMVNWLLS----H-----DRCALWASMGSGKTVSVLFAL--STIKILDPR-PVLIIAPLRVAQYVWKDEVERWSAF 74 (220)
Q Consensus 7 p~Q~~a~~~~~~----~-----~~~~l~~~~G~GKT~~ai~~~--~~~~~~~~~-~~LIi~P~s~~~~~W~~e~~~~~~~ 74 (220)
T Consensus 1 PwQ~f~i~~ifGw~~~~g~Rrfr~~~i~v~RkNGKS~l~a~i~ly~~~~~ge~~~ei~~~A~~~~QA~~~f~~~~~mi~~ 80 (473)
T pfam03354 1 PWQKFILGLMFGWRKGCGVRRFREAYVSVGRKNGKSYLMAIRVLYELLLGGKSNQEILVAATTFKQAEKLFKYVKNQVKL 80 (473)
T ss_pred CCHHHHHHHEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 94615625144189289988999999998268602699999999999709983874999979899999999999999973
Q ss_pred CC-CEEE---EEECCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 46-0699---8611210112234567662786566731000000002472000025122013654332036999999985
Q gi|254780129|r 75 SD-MTVS---SLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA 150 (220)
Q Consensus 75 ~~-~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~ 150 (220)
T Consensus 81 ~p~l~~~~~~~~~~~~~~~i~~~~t~s~~~~ls~~------~~~~dG~~~~~~i~DE~h~~~~~------~~~~~l~sg~ 148 (473)
T pfam03354 81 SPFLSIANENKLLKSQKDGIEMKINNNVFKALSNN------GDQYDGGNPSLAIFDEMHEFKDR------ELVSTIVTGM 148 (473)
T ss_pred CHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECC------CCCCCCCCCCEEEEEECCCCCCH------HHHHHHHHHH
T ss_conf 98777553011013100158980789689998578------98766998728998722304882------7899998763
Q ss_pred HCC--CCEEEEECCCCCCCCHH-HHHHHHH-HH
Q ss_conf 137--98799831653248889-9999999-82
Q gi|254780129|r 151 FSK--VKRFIELTGTPSPNGLI-DLWGQIW-FL 179 (220)
Q Consensus 151 ~~~--~~~~l~LTgTPi~n~~~-el~~ll~-~l 179 (220)
T Consensus 149 ~~r~~~l~~~ITTag~~~~~~~~~~~~~~~~vl 181 (473)
T pfam03354 149 RKQDNPQTIQITTAGPNRGGPYDEEREYIKRIL 181 (473)
T ss_pred HCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 168887199976778898871899999999997