HHsearch alignment for GI: 254780129 and conserved domain: pfam04466
>pfam04466 Terminase_3 Phage terminase large subunit. Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Probab=96.96 E-value=0.018 Score=33.40 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=58.2
Q ss_pred CEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCE
Q ss_conf 199968999889999-999999974089948997233-101378899998515534606998611210112234567662
Q gi|254780129|r 22 CALWASMGSGKTVSV-LFALSTIKILDPRPVLIIAPL-RVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHL 99 (220)
Q Consensus 22 ~~l~~~~G~GKT~~a-i~~~~~~~~~~~~~~LIi~P~-s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (220)
T Consensus 5 ~v~~GGrgsgKS~~~a~~~i~~~~-~~~~~~l~~r~~~~slr~sv~~~~~~~i~~~~~~~~~~~~~s~~~i~~~~~gs~i 83 (387)
T pfam04466 5 KVAKGGRGSGKSYHIALKLVLKLL-MHPRTNLVIREVKNTIEDSVFTQLQEALSMLGLDHEFKISKSPIEITVKINGSKF 83 (387)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCEE
T ss_conf 999908886799999999999998-7898699997556889999999999999976997348973761489987899699
Q ss_pred EEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCH
Q ss_conf 7865667310000000024720000251220136543320369999999851379879983165324-888
Q gi|254780129|r 100 YIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSP-NGL 169 (220)
Q Consensus 100 ~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~-n~~ 169 (220)
T Consensus 84 ~f~G~d~----~~~iks~~~i~~~~~eEa~~~~~------~~~~~l~~~~r~~~~~~~i~~~~NP~~~~~w 144 (387)
T pfam04466 84 LFYGMDD----PAKIKSIKDVSDAWIEEAAEFKT------EDFDQLIPTIRRPKPGSEIFMSFNPVNKLNW 144 (387)
T ss_pred EEEECCC----HHHHHCCCCCEEEEEECHHHCCH------HHHHHHHHHHCCCCCCEEEEEECCCCCCCCH
T ss_conf 9985789----68841636614999941244799------8999999885317887199998289998774