HHsearch alignment for GI: 254780129 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=92.93 E-value=0.64 Score=24.45 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=21.6
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 19996899988999999999997408994899723
Q gi|254780129|r 22 CALWASMGSGKTVSVLFALSTIKILDPRPVLIIAP 56 (220)
Q Consensus 22 ~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P 56 (220)
T Consensus 22 ~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ 56 (231)
T pfam06745 22 VLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTL 56 (231)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99985897259999999999999865896899981