HHsearch alignment for GI: 254780129 and conserved domain: pfam07015
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=94.38 E-value=0.35 Score=25.94 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE-E-CCCCCHHHHHHHHHH
Q ss_conf 999889999999999974089948997-2-331013788999985
Q gi|254780129|r 28 MGSGKTVSVLFALSTIKILDPRPVLII-A-PLRVAQYVWKDEVER 70 (220)
Q Consensus 28 ~G~GKT~~ai~~~~~~~~~~~~~~LIi-~-P~s~~~~~W~~e~~~ 70 (220)
T Consensus 11 GG~GKtT~a~~la~~~~~~-g~~V~liD~Dpq~s~~~-W~~~a~~ 53 (231)
T pfam07015 11 GGAGKTTALMGLCSALASD-GKRVALFEADENRPLTK-WRENALR 53 (231)
T ss_pred CCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCHHH-HHHHHHH
T ss_conf 9865999999999999968-99599996899868899-9998764