HHsearch alignment for GI: 254780129 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=99.10 E-value=6.8e-10 Score=75.97 Aligned_cols=133 Identities=17% Similarity=0.090 Sum_probs=74.3
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 19996899988999999999997408994899723310137889999851553460699861121011223456766278
Q gi|254780129|r 22 CALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYI 101 (220)
Q Consensus 22 ~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 101 (220)
T Consensus 5 t~ld~HPGaGKTr~vLP~~v~~~i~~~lRtlVLaPTRVV~----~Em~eAL~g~~vr~~t~--a~~~---~~~~~~ivdv 75 (146)
T pfam07652 5 TVLDLHPGAGKTRKVLPELVRECIDRRLRTLVLAPTRVVL----AEMEEALRGLPIRYHTP--AVSS---EHTGREIVDV 75 (146)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHH----HHHHHHHCCCCCEEECH--HHHC---CCCCCCEEEE
T ss_conf 7985389999702248999999997286189977279999----99999975899467523--4313---6688841889
Q ss_pred ECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 656673100000000247200002512201365433203699999998513798799831653248
Q gi|254780129|r 102 INFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPN 167 (220)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n 167 (220)
T Consensus 76 mCHAT~t~r~l~~~~~~ny~viIMDE~H~~-DP~---SIAarG~~~~~~~~g~~a~i~mTATPPG~ 137 (146)
T pfam07652 76 MCHATFTQRLLSPVRVPNYEVIIMDEAHFT-DPA---SIAARGYISTLVELGEAAAIFMTATPPGT 137 (146)
T ss_pred ECHHHHHHHHHCCCCCCCEEEEEEECCCCC-CHH---HHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 715988889736888564479998512238-989---99988999988543865799995689998