BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter asiaticus str. psy62] (220 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter asiaticus str. psy62] Length = 220 Score = 449 bits (1156), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/220 (100%), Positives = 220/220 (100%) Query: 1 MHLVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVA 60 MHLVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVA Sbjct: 1 MHLVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVA 60 Query: 61 QYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDF 120 QYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDF Sbjct: 61 QYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDF 120 Query: 121 ATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLD 180 ATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLD Sbjct: 121 ATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLD 180 Query: 181 KGKRLGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE 220 KGKRLGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE Sbjct: 181 KGKRLGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE 220 >gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 286 bits (733), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 143/216 (66%), Positives = 166/216 (76%), Gaps = 1/216 (0%) Query: 5 LKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVW 64 L PHQ +V+W+L H RCA+WASMGSGKTVSVL ALS I + + VL+IAPLRVAQ VW Sbjct: 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVW 62 Query: 65 KDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIV 124 EV+RWS FS M +S + G+ +QR K L TPA LY+INFEN+ WLV+ W FATIV Sbjct: 63 TSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIV 122 Query: 125 VDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLDKGKR 184 VDESTKLKSFR QG+K RAL K A+ +RFIELTGTPSPNGLIDLWGQIWFLDKGKR Sbjct: 123 VDESTKLKSFRLRQGSKTARALAKPAWES-ERFIELTGTPSPNGLIDLWGQIWFLDKGKR 181 Query: 185 LGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE 220 LG F+SFV RWF+T Q+GS IGAV++ K AQKE Sbjct: 182 LGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKE 217 >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 37.7 bits (86), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 7 PHQIVMVNWLLS-HDRCALWASMGSGKTVSVLFALSTI------KILDPRPVLIIAPLRV 59 P QI + +L HD C + A G+GKT S + + TI ++ PR LI+ P R Sbjct: 26 PIQIKTIPLVLQRHDVCGI-AQTGTGKTASFVLPMLTILEKGRARVRMPR-TLILEPTRE 83 Query: 60 AQYVWKDEVERWSAFSDMTVSSLIG 84 D E++ ++TV+ LIG Sbjct: 84 LAAQVADNFEKYGKNYNLTVALLIG 108 >gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 426 Score = 29.6 bits (65), Expect = 0.040, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Query: 2 HLVLKPHQI--VMVNWLL-SHDRCALWASMGSGKTVSVLF 38 ++ +KPH I + WL+ S+D C ++ +MGSG S+ F Sbjct: 320 YMAVKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKF 359 >gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 616 Score = 26.6 bits (57), Expect = 0.37, Method: Compositional matrix adjust. Identities = 11/54 (20%), Positives = 26/54 (48%) Query: 159 ELTGTPSPNGLIDLWGQIWFLDKGKRLGLSFKSFVERWFHTQQVGSSIGAVKHI 212 ++ P ++D+ G++ ++ K L KS++ HT ++ I + +I Sbjct: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 >gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] Length = 134 Score = 23.5 bits (49), Expect = 3.5, Method: Compositional matrix adjust. Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 183 KRLGLSFKSFVERWFHTQQVGSSIGAVKHIPKIN 216 K++G+ +FVE + V ++ G VK+ P +N Sbjct: 64 KKIGVDQSTFVEEFDPGHPVANASGIVKY-PNVN 96 >gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] Length = 890 Score = 21.9 bits (45), Expect = 7.9, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 18/36 (50%) Query: 3 LVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLF 38 L ++P + ++ ++ H C G GKT++ + Sbjct: 82 LGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVL 117 >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 21.9 bits (45), Expect = 8.8, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 14/110 (12%) Query: 103 NFENIP-WLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELT 161 N ++P W ++ + + A ++VD + + T + G ++ S + +LT Sbjct: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD---WTKLT 557 Query: 162 GTPSPNGLIDL---WGQIWFLDKGKRLGLSFKSFVERWFHTQQVGSSIGA 208 T N +D +WF ++GK L F +E GS I A Sbjct: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-------TGSCIKA 600 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.136 0.426 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139,359 Number of Sequences: 1233 Number of extensions: 5299 Number of successful extensions: 24 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 9 length of query: 220 length of database: 328,796 effective HSP length: 71 effective length of query: 149 effective length of database: 241,253 effective search space: 35946697 effective search space used: 35946697 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 36 (18.5 bits)