BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780129|ref|YP_003064542.1| hypothetical protein
CLIBASIA_00040 [Candidatus Liberibacter asiaticus str. psy62]
         (220 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 220

 Score =  449 bits (1156), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MHLVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVA 60
           MHLVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVA
Sbjct: 1   MHLVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVA 60

Query: 61  QYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDF 120
           QYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDF
Sbjct: 61  QYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDF 120

Query: 121 ATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLD 180
           ATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLD
Sbjct: 121 ATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLD 180

Query: 181 KGKRLGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE 220
           KGKRLGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE
Sbjct: 181 KGKRLGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE 220


>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
          Length = 458

 Score =  286 bits (733), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/216 (66%), Positives = 166/216 (76%), Gaps = 1/216 (0%)

Query: 5   LKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVW 64
           L PHQ  +V+W+L H RCA+WASMGSGKTVSVL ALS I +   + VL+IAPLRVAQ VW
Sbjct: 3   LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVW 62

Query: 65  KDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIV 124
             EV+RWS FS M +S + G+ +QR K L TPA LY+INFEN+ WLV+     W FATIV
Sbjct: 63  TSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIV 122

Query: 125 VDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLDKGKR 184
           VDESTKLKSFR  QG+K  RAL K A+   +RFIELTGTPSPNGLIDLWGQIWFLDKGKR
Sbjct: 123 VDESTKLKSFRLRQGSKTARALAKPAWES-ERFIELTGTPSPNGLIDLWGQIWFLDKGKR 181

Query: 185 LGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE 220
           LG  F+SFV RWF+T Q+GS IGAV++  K  AQKE
Sbjct: 182 LGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKE 217


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score = 37.7 bits (86), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 7   PHQIVMVNWLLS-HDRCALWASMGSGKTVSVLFALSTI------KILDPRPVLIIAPLRV 59
           P QI  +  +L  HD C + A  G+GKT S +  + TI      ++  PR  LI+ P R 
Sbjct: 26  PIQIKTIPLVLQRHDVCGI-AQTGTGKTASFVLPMLTILEKGRARVRMPR-TLILEPTRE 83

Query: 60  AQYVWKDEVERWSAFSDMTVSSLIG 84
                 D  E++    ++TV+ LIG
Sbjct: 84  LAAQVADNFEKYGKNYNLTVALLIG 108


>gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 426

 Score = 29.6 bits (65), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 2   HLVLKPHQI--VMVNWLL-SHDRCALWASMGSGKTVSVLF 38
           ++ +KPH I    + WL+ S+D C ++ +MGSG   S+ F
Sbjct: 320 YMAVKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKF 359


>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 616

 Score = 26.6 bits (57), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 159 ELTGTPSPNGLIDLWGQIWFLDKGKRLGLSFKSFVERWFHTQQVGSSIGAVKHI 212
           ++   P    ++D+ G++ ++ K   L    KS++    HT ++   I  + +I
Sbjct: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58


>gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 134

 Score = 23.5 bits (49), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 183 KRLGLSFKSFVERWFHTQQVGSSIGAVKHIPKIN 216
           K++G+   +FVE +     V ++ G VK+ P +N
Sbjct: 64  KKIGVDQSTFVEEFDPGHPVANASGIVKY-PNVN 96


>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 890

 Score = 21.9 bits (45), Expect = 7.9,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 3   LVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLF 38
           L ++P  + ++  ++ H  C      G GKT++ + 
Sbjct: 82  LGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVL 117


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1040

 Score = 21.9 bits (45), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 103 NFENIP-WLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELT 161
           N  ++P W  ++  +  + A ++VD   +  +      T +    G ++ S    + +LT
Sbjct: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD---WTKLT 557

Query: 162 GTPSPNGLIDL---WGQIWFLDKGKRLGLSFKSFVERWFHTQQVGSSIGA 208
            T   N  +D       +WF ++GK L   F   +E        GS I A
Sbjct: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-------TGSCIKA 600


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,359
Number of Sequences: 1233
Number of extensions: 5299
Number of successful extensions: 24
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 9
length of query: 220
length of database: 328,796
effective HSP length: 71
effective length of query: 149
effective length of database: 241,253
effective search space: 35946697
effective search space used: 35946697
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 36 (18.5 bits)