HHsearch alignment for GI: 254780130 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=99.10 E-value=9.4e-10 Score=73.51 Aligned_cols=125 Identities=17% Similarity=0.287 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 34334999986148997110578999999987653----------04778234899999972789869997214432332
Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205)
Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205)
T Consensus 259 ~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaT-DvaaRGi 337 (513)
T COG0513 259 EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-DVAARGL 337 (513)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-CHHHCCC
T ss_conf 799999999827888839999576776999999999789659997388998899999999975998989980-6544689
Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 24320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205)
Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205)
T Consensus 338 Di~-~v~~VinyD~p~~~e~yvHRiGRT-----gRaG~~G~--ai~fv~~-~~e~~~l~~i~~~~ 393 (513)
T COG0513 338 DIP-DVSHVINYDLPLDPEDYVHRIGRT-----GRAGRKGV--AISFVTE-EEEVKKLKRIEKRL 393 (513)
T ss_pred CCC-CCCEEEECCCCCCCCCCCCCCCCC-----CCCCCCCE--EEEEECC-HHHHHHHHHHHHHH
T ss_conf 966-674799787999804131734534-----34899872--7998556-23499999999987