HHsearch alignment for GI: 254780130 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=98.78 E-value=8.3e-08 Score=62.73 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 23433499998614-8997110578999999987653047---------7823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~-~~~kviVf~~f~~~l~~l~~~~~~~---------~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~-~vl~EG 345 (442)
T COG1061 267 ERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTV-KVLDEG 345 (442)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-EEECCC
T ss_conf 8999999999875326886699975779999999986267742466578998899999999870895299996-141266
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHC-CCCCCC--EEEEEEEECCCHHHHHHHHHHH
Q ss_conf 224320675897268999888022555576665420-265775--3999998388958999999999
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ-AGFKRA--VFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR-~GQ~~~--v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
T Consensus 346 vDiP~-~~~~i~~~~t~S~~~~~Q~lGR~-----LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 346 VDIPD-ADVLIILRPTGSRRLFIQRLGRG-----LRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCCC-CCEEEEECCCCCHHHHHHHHHHH-----HCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 57888-75799977998799999996166-----347889996599999645676443326666433