HHsearch alignment for GI: 254780130 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=90.51 E-value=0.77 Score=24.18 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHH---HHHHHHHHHHHHCCC-----CHHHHHHHHHHHHCCCCCEEEECHHHHH---HH
Q ss_conf 343349999861489971105789---999999876530477-----8234899999972789869997214432---33
Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHF---NSDLARLQKAFPQGR-----TLDKDPCTIQEWNEGKIPLLFAHPASCG---HG 122 (205)
Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f---~~~l~~l~~~~~~~~-----~~~~r~~~i~~f~~~~~~Vll~~~~a~g---~G 122 (205)
T Consensus 322 ~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~~GeidvLVGvAsyYG~lVRG 400 (1187)
T COG1110 322 ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEKEEALEDFEEGEVDVLVGVASYYGVLVRG 400 (1187)
T ss_pred CCHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCEEEEEEECCCCCCEEEC
T ss_conf 6378899999984-897499997177389999999999866960798623202245665067601799850213430224
Q ss_pred HHHHHHCCEEEEECCC
Q ss_conf 2243206758972689
Q gi|254780130|r 123 LNLQYGGNILVFFSLW 138 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~ 138 (205)
T Consensus 401 lDLP~rirYaIF~GvP 416 (1187)
T COG1110 401 LDLPHRIRYAVFYGVP 416 (1187)
T ss_pred CCCHHHEEEEEEECCC
T ss_conf 7743454578995587