HHsearch alignment for GI: 254780130 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=93.79 E-value=0.16 Score=28.04 Aligned_cols=107 Identities=15% Similarity=0.262 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHH------------HHHHHHHC--------CCCHHHHHHHHHHHHCCCCC
Q ss_conf 2343349999861--48997110578999999------------98765304--------77823489999997278986
Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------------RLQKAFPQ--------GRTLDKDPCTIQEWNEGKIP 110 (205)
Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~------------~l~~~~~~--------~~~~~~r~~~i~~f~~~~~~ 110 (205)
T Consensus 456 ~~~~~~v~e~i~~ei~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 456 HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 44479999999999974997999952535433113654999999999870546367775689867799999999808876
Q ss_pred EEEECHHHHHHHHHHHHHCCEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 999721443233224320675897268-99988802255557666542026577539
Q gi|254780130|r 111 LLFAHPASCGHGLNLQYGGNILVFFSL-WWDLEEHQQMIERIGVTRQRQAGFKRAVF 166 (205)
Q Consensus 111 Vll~~~~a~g~GlnL~~a~~~vI~~~~-~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~ 166 (205)
T Consensus 536 ILVaTT-VIEVGVdVPn-ATvMVIe~AERFGLaQLHQLRGRV-----GRG~~qSyC~ 585 (677)
T COG1200 536 ILVATT-VIEVGVDVPN-ATVMVIENAERFGLAQLHQLRGRV-----GRGDLQSYCV 585 (677)
T ss_pred EEEEEE-EEEECCCCCC-CEEEEEECHHHHHHHHHHHHCCCC-----CCCCCCEEEE
T ss_conf 899813-8995235788-707999654330378888752655-----7887544899