HHsearch alignment for GI: 254780130 and conserved domain: COG4096

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=94.52  E-value=0.054  Score=30.57  Aligned_cols=95  Identities=18%  Similarity=0.197  Sum_probs=67.3

Q ss_pred             HHHHHHHHC-CC---CCEEEHHHHHHHHHHHHHHH----HCCCC---------HHHHHHHHHHHH-CCCCCEEEECHHHH
Q ss_conf             499998614-89---97110578999999987653----04778---------234899999972-78986999721443
Q gi|254780130|r   58 ALEVIIEKA-NA---APIIVAYHFNSDLARLQKAF----PQGRT---------LDKDPCTIQEWN-EGKIPLLFAHPASC  119 (205)
Q Consensus        58 ~l~~ii~~~-~~---~kviVf~~f~~~l~~l~~~~----~~~~~---------~~~r~~~i~~f~-~~~~~Vll~~~~a~  119 (205)
T Consensus       412 ~~~e~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~~ke~~P~IaitvdlL  491 (875)
T COG4096         412 ELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQALIDNFIDKEKYPRIAITVDLL  491 (875)
T ss_pred             HHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEHHHH
T ss_conf             99998425668886684589962707899999999874801067459998444065689999887437898358761245


Q ss_pred             HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             2332243206758972689998880225555766
Q gi|254780130|r  120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV  153 (205)
Q Consensus       120 g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~  153 (205)
T Consensus       492 ~TGiDvpev~n-lVF~r~V~SktkF~QMvGRGTR  524 (875)
T COG4096         492 TTGVDVPEVVN-LVFDRKVRSKTKFKQMVGRGTR  524 (875)
T ss_pred             HCCCCCHHEEE-EEEHHHHHHHHHHHHHHCCCCC
T ss_conf             42787622045-6431444668999998667654