HHsearch alignment for GI: 254780130 and conserved domain: COG4096
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=94.52 E-value=0.054 Score=30.57 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=67.3
Q ss_pred HHHHHHHHC-CC---CCEEEHHHHHHHHHHHHHHH----HCCCC---------HHHHHHHHHHHH-CCCCCEEEECHHHH
Q ss_conf 499998614-89---97110578999999987653----04778---------234899999972-78986999721443
Q gi|254780130|r 58 ALEVIIEKA-NA---APIIVAYHFNSDLARLQKAF----PQGRT---------LDKDPCTIQEWN-EGKIPLLFAHPASC 119 (205)
Q Consensus 58 ~l~~ii~~~-~~---~kviVf~~f~~~l~~l~~~~----~~~~~---------~~~r~~~i~~f~-~~~~~Vll~~~~a~ 119 (205)
T Consensus 412 ~~~e~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~~ke~~P~IaitvdlL 491 (875)
T COG4096 412 ELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQALIDNFIDKEKYPRIAITVDLL 491 (875)
T ss_pred HHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEHHHH
T ss_conf 99998425668886684589962707899999999874801067459998444065689999887437898358761245
Q ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 2332243206758972689998880225555766
Q gi|254780130|r 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153 (205)
Q Consensus 120 g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~ 153 (205)
T Consensus 492 ~TGiDvpev~n-lVF~r~V~SktkF~QMvGRGTR 524 (875)
T COG4096 492 TTGVDVPEVVN-LVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred HCCCCCHHEEE-EEEHHHHHHHHHHHHHHCCCCC
T ss_conf 42787622045-6431444668999998667654