HHsearch alignment for GI: 254780130 and conserved domain: PRK04837

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.30  E-value=4.1e-11  Score=81.04  Aligned_cols=115  Identities=17%  Similarity=0.243  Sum_probs=94.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             7234334999986148997110578999999987653----------047782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
T Consensus       240 ~~~K~~~L~~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaT-DvaaR  318 (423)
T PRK04837        240 NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVAT-DVAAR  318 (423)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHC
T ss_conf             27799999999984088746886162888999999997659817872254579999999999976999899870-04327


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf             322432067589726899988802255557666542026577539999983889
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT  175 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~t  175 (205)
T Consensus       319 GLDi~-~V~~VInyD~P~~~~~YiHRiGRTg-----RaG~~G~--aitf~~~~~  364 (423)
T PRK04837        319 GLHIP-DVTHVFNYDLPDDCEDYVHRIGRTG-----RAGASGH--SISFACEEY  364 (423)
T ss_pred             CCCCC-CCCEEEEECCCCCHHHEECCCCHHH-----CCCCCEE--EEEEECHHH
T ss_conf             77726-7988999699897455100465412-----7899468--999873999