HHsearch alignment for GI: 254780130 and conserved domain: TIGR02621
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=95.60 E-value=0.008 Score=35.17 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHCC---------C-CCEEEECHHHH
Q ss_conf 4899711057899999998765304778----------------23489999997278---------9-86999721443
Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFPQGRT----------------LDKDPCTIQEWNEG---------K-IPLLFAHPASC 119 (205)
Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~~~~~----------------~~~r~~~i~~f~~~---------~-~~Vll~~~~a~ 119 (205)
T Consensus 309 s~g~~~~Vf~~~~~~v~~v~a~L~k~~~~~~~ltG~vr~~~~d~lar~~~~~~~~Lpp~~~~s~g~~~~g~~~vVaTst~ 388 (975)
T TIGR02621 309 SSGEAILVFCNTVDEVKKVVAKLPKEARRLEDLTGTVRGLERDMLARRGEIFNRFLPPYRSGSEGRPQQGTVYVVATSTG 388 (975)
T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCE
T ss_conf 27866999876843068988645774540776288104334785200131453148764567736689987799973242
Q ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 2332243206758972689998880225555766654202657753999
Q gi|254780130|r 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 120 g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
T Consensus 389 EVGadl-df-dhLv-t~~-~~~~sl~QRfGRvn-----R~G~r~~~~~~ 428 (975)
T TIGR02621 389 EVGADL-DF-DHLV-TDL-APFESLVQRFGRVN-----RFGERLDGSIA 428 (975)
T ss_pred EECCCC-CC-CHHH-HCC-CHHHHHHHHHHHHC-----CCCCCCCCEEE
T ss_conf 550344-31-1122-114-42457865430020-----00223165058