HHsearch alignment for GI: 254780130 and conserved domain: TIGR03158

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.

Probab=92.50  E-value=0.38  Score=25.86  Aligned_cols=79  Identities=14%  Similarity=0.163  Sum_probs=46.1

Q ss_pred             CCCCCEEEHHHHHHHHHHHHHHHHCCCC---HH-----HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECC
Q ss_conf             4899711057899999998765304778---23-----489999997278986999721443233224320675897268
Q gi|254780130|r   66 ANAAPIIVAYHFNSDLARLQKAFPQGRT---LD-----KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL  137 (205)
Q Consensus        66 ~~~~kviVf~~f~~~l~~l~~~~~~~~~---~~-----~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~  137 (205)
T Consensus       270 ~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--rek~~~~~~vVaT-saLElGIDi-~-~d~~i-~~-  342 (357)
T TIGR03158       270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD--RERAMQFDILLGT-STVDVGVDF-K-RDWLI-FS-  342 (357)
T ss_pred             HHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHH--HHCCCCCCEEEEC-CCCEEEEEC-C-CCEEE-EC-
T ss_conf             5267179995589999999999986336411455425561889--8504899999987-701035611-7-89899-58-


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             99988802255557
Q gi|254780130|r  138 WWDLEEHQQMIERI  151 (205)
Q Consensus       138 ~~n~~~~~Qa~~Ri  151 (205)
T Consensus       343 ~~~v~sl~QR~GRa  356 (357)
T TIGR03158       343 ARDAAAFWQRLGRL  356 (357)
T ss_pred             CCCHHHHHHCCCCC
T ss_conf             98788899726679