HHsearch alignment for GI: 254780130 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=99.85 E-value=1.6e-21 Score=138.68 Aligned_cols=112 Identities=21% Similarity=0.359 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 05723433499998614--89971105789999999876530----------4778234899999972789869997214
Q gi|254780130|r 50 EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117 (205)
Q Consensus 50 ~~~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~ 117 (205)
T Consensus 8 ~~~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t-~ 86 (131)
T cd00079 8 PVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVAT-D 86 (131)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEE-E
T ss_conf 386699999999999999789909999788999999999995589989999899999999999999775401048875-1
Q ss_pred HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 432332243206758972689998880225555766654202657753999
Q gi|254780130|r 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 118 a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
T Consensus 87 ~~~~Gldl~-~~~~vI~~~~~~s~~~~~Q~~GR~-----~R~gq~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLP-NVSVVINYDLPWSPSSYLQRIGRA-----GRAGQKGTAILL 131 (131)
T ss_pred CCEECCCCC-CCCEEEEECCCCCHHHHHHHHHCC-----CCCCCCEEEEEC
T ss_conf 120036610-287999978996989999897216-----708996379979