HHsearch results for GI: 254780130 and protein with PDBid: 1gm5_A
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.89 E-value=2.5e-06 Score=53.38 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=62.8
Q ss_pred HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHH-HHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 047782348999999727898699972144323322432067589726899988802-2555576665420265775399
Q gi|254780130|r 89 PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ-QMIERIGVTRQRQAGFKRAVFV 167 (205)
Q Consensus 89 ~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~-Qa~~Ri~~~r~hR~GQ~~~v~v 167 (205)
.++...++|+.+++.|.+|+++||++| .+++.|+|+.. +++||.++.|.....+. |-.||. -|.|.+..|.
T Consensus 620 HG~m~~~eR~~im~~Fr~Gk~~ILVaT-dVierGIDiPn-v~~VIi~dap~~~lsyLHQi~GRv-----GR~g~~G~~i- 691 (780)
T 1gm5_A 620 HGRLSQEEKDRVMLEFAEGRYDILVST-TVIEVGIDVPR-ANVMVIENPERFGLAQLHQLRGRV-----GRGGQEAYCF- 691 (780)
T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCS-SCCCSCSCCTT-CCEEEBCSCSSSCTTHHHHHHHTS-----CCSSTTCEEE-
T ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEEC-HHHHCCCCCCC-CCEEEEECCCCCCHHHHHHHHCCC-----CCCCCCEEEE-
T ss_conf 278999999999999985999999988-26545478325-868999799977689999872125-----7598955999-
Q ss_pred EEEEECCCHHHHHHHHHHH
Q ss_conf 9998388958999999999
Q gi|254780130|r 168 YYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 168 ~~l~~~~tiEe~i~~~l~~ 186 (205)
-+.+ ..++..+++|..
T Consensus 692 -ll~~--~~~~~~~~RL~~ 707 (780)
T 1gm5_A 692 -LVVG--DVGEEAMERLRF 707 (780)
T ss_dssp -CCCC--SCCHHHHHHHHH
T ss_pred -EEEC--CCCHHHHHHHHH
T ss_conf -9979--999799999999