HHsearch results for GI: 254780130 and protein with PDBid: 1s2m_A
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.25 E-value=4.9e-11 Score=79.41 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=88.7
Q ss_pred HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 4999986148997110578999999987653----------047782348999999727898699972144323322432
Q gi|254780130|r 58 ALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127 (205)
Q Consensus 58 ~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~ 127 (205)
....+.+...+.++|||++.....+.+...+ .+.....+|....+.|++|+.+|++++ .+.+.|+|+.
T Consensus 248 ~~~~~~~~~~~~k~iVF~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~R~~~~~~F~~g~~~iLv~T-~~~~~GiDip- 325 (400)
T 1s2m_A 248 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-DLLTRGIDIQ- 325 (400)
T ss_dssp HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-SCSSSSCCCT-
T ss_pred HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE-HHHHCCCCCC-
T ss_conf 77888763257727999853441177899998679967874245799999999999876998640320-0343355556-
Q ss_pred HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 0675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205)
Q Consensus 128 a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205)
..++||+|++|.|...|.|..||. -|.|+.- .++.|++++ |...++.+.
T Consensus 326 ~V~~VI~~~~p~s~~~yiqr~GR~-----gR~g~~G--~ai~~~~~~--d~~~~~~i~ 374 (400)
T 1s2m_A 326 AVNVVINFDFPKTAETYLHRIGRS-----GRFGHLG--LAINLINWN--DRFNLYKIE 374 (400)
T ss_dssp TEEEEEESSCCSSHHHHHHHHCBS-----SCTTCCE--EEEEEECGG--GHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHCCC-----CCCCCCE--EEEEEECHH--HHHHHHHHH
T ss_conf 788899969999999999673434-----4699965--999986589--999999999