HHsearch results for GI: 254780130 and protein with PDBid: 1t5i_A
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=5.3e-17 Score=112.39 Aligned_cols=127 Identities=14% Similarity=0.202 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
.+.|+++|.++++..++.++||||++....+.|.+.+. ++.+..+|...++.|++|+.++++++ .+++.
T Consensus 15 ~~~K~~~L~~ll~~~~~~k~iIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~l~~F~~g~~~iLi~T-d~~~~ 93 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGR 93 (172)
T ss_dssp GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-SCCST
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC-CHHHH
T ss_conf 69999999999982899929999794899999999998779975788999999999999999970984488603-46551
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 3224320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205)
|+|++ .++++|+|++||++..|.|+.||. .|.|++..+ +.|++. .-|..++..+.++.
T Consensus 94 Gidi~-~~~~Vi~~d~p~~~~~yiqr~GR~-----gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~~ 151 (172)
T 1t5i_A 94 GMDIE-RVNIAFNYDMPEDSDTYLHRVARA-----GRFGTKGLA--ITFVSD-ENDAKILNDVQDRF 151 (172)
T ss_dssp TCCGG-GCSEEEESSCCSSHHHHHHHHHHH-----TGGGCCCEE--EEEECS-HHHHHHHHHHHHHH
T ss_pred CCCCC-CCCHHHHHCCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEECC-HHHHHHHHHHHHHH
T ss_conf 67776-410245517999999998886556-----718995089--999894-57899999999997