HHsearch results for GI: 254780130 and protein with PDBid: 1t5i_A

>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73  E-value=5.3e-17  Score=112.39  Aligned_cols=127  Identities=14%  Similarity=0.202  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      .+.|+++|.++++..++.++||||++....+.|.+.+.          ++.+..+|...++.|++|+.++++++ .+++.
T Consensus        15 ~~~K~~~L~~ll~~~~~~k~iIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~l~~F~~g~~~iLi~T-d~~~~   93 (172)
T 1t5i_A           15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGR   93 (172)
T ss_dssp             GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-SCCST
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC-CHHHH
T ss_conf             69999999999982899929999794899999999998779975788999999999999999970984488603-46551


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             3224320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS  188 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~  188 (205)
                      |+|++ .++++|+|++||++..|.|+.||.     .|.|++..+  +.|++. .-|..++..+.++.
T Consensus        94 Gidi~-~~~~Vi~~d~p~~~~~yiqr~GR~-----gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~~  151 (172)
T 1t5i_A           94 GMDIE-RVNIAFNYDMPEDSDTYLHRVARA-----GRFGTKGLA--ITFVSD-ENDAKILNDVQDRF  151 (172)
T ss_dssp             TCCGG-GCSEEEESSCCSSHHHHHHHHHHH-----TGGGCCCEE--EEEECS-HHHHHHHHHHHHHH
T ss_pred             CCCCC-CCCHHHHHCCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEECC-HHHHHHHHHHHHHH
T ss_conf             67776-410245517999999998886556-----718995089--999894-57899999999997