HHsearch results for GI: 254780130 and protein with PDBid: 1wp9_A

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=99.82  E-value=2.9e-20  Score=130.49  Aligned_cols=131  Identities=21%  Similarity=0.264  Sum_probs=104.9

Q ss_pred             CHHHHHHHHHHH----HHCCCCCEEEHHHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHCCCC
Q ss_conf             723433499998----614899711057899999998765304------------------7782348999999727898
Q gi|254780130|r   52 HDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQ------------------GRTLDKDPCTIQEWNEGKI  109 (205)
Q Consensus        52 ~~~Kl~~l~~ii----~~~~~~kviVf~~f~~~l~~l~~~~~~------------------~~~~~~r~~~i~~f~~~~~  109 (205)
                      .++|++.+.+++    +..++.+++||+++....+.|...+..                  +....+|..+++.|+++++
T Consensus       341 ~~~k~~~~~~~l~~~~~~~~~~~~~if~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~l~~F~~~~~  420 (494)
T 1wp9_A          341 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF  420 (494)
T ss_dssp             SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             75089999999888875056654432113399999999999856985378623554446778899999999999977999


Q ss_pred             CEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             69997214432332243206758972689998880225555766654202657753999998388958999999999999
Q gi|254780130|r  110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST  189 (205)
Q Consensus       110 ~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~  189 (205)
                      +||+++ .+++.||||+. +++||+||+||||..+.|++||+     .|.|   +..++.|+++||+|+.+++.+..|..
T Consensus       421 ~VLi~T-~~~~~Gidl~~-~~~VI~~d~p~~~~~~~Qr~GR~-----~R~~---~g~~~~l~~~~~~e~~~~~~~~~k~~  490 (494)
T 1wp9_A          421 NVLVAT-SVGEEGLDVPE-VDLVVFYEPVPSAIRSIQRRGRT-----GRHM---PGRVIILMAKGTRDEAYYWSSRQKEK  490 (494)
T ss_dssp             SEEEEC-GGGGGGGGSTT-CCEEEESSCCHHHHHHHHHHTTS-----CSCC---CSEEEEEEETTSHHHHHHHHCC----
T ss_pred             CEEEEC-CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHHC-----CCCC---CCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             899885-51050677135-99999959998989999998545-----8899---98899999799879999999999998


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780130|r  190 IQD  192 (205)
Q Consensus       190 ~~~  192 (205)
                      ++.
T Consensus       491 ~~~  493 (494)
T 1wp9_A          491 IMQ  493 (494)
T ss_dssp             ---
T ss_pred             HCC
T ss_conf             716