HHsearch results for GI: 254780130 and protein with PDBid: 1wp9_A
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=2.9e-20 Score=130.49 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHH----HHCCCCCEEEHHHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHCCCC
Q ss_conf 723433499998----614899711057899999998765304------------------7782348999999727898
Q gi|254780130|r 52 HDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQ------------------GRTLDKDPCTIQEWNEGKI 109 (205)
Q Consensus 52 ~~~Kl~~l~~ii----~~~~~~kviVf~~f~~~l~~l~~~~~~------------------~~~~~~r~~~i~~f~~~~~ 109 (205)
.++|++.+.+++ +..++.+++||+++....+.|...+.. +....+|..+++.|+++++
T Consensus 341 ~~~k~~~~~~~l~~~~~~~~~~~~~if~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~l~~F~~~~~ 420 (494)
T 1wp9_A 341 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF 420 (494)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 75089999999888875056654432113399999999999856985378623554446778899999999999977999
Q ss_pred CEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 69997214432332243206758972689998880225555766654202657753999998388958999999999999
Q gi|254780130|r 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189 (205)
Q Consensus 110 ~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~ 189 (205)
+||+++ .+++.||||+. +++||+||+||||..+.|++||+ .|.| +..++.|+++||+|+.+++.+..|..
T Consensus 421 ~VLi~T-~~~~~Gidl~~-~~~VI~~d~p~~~~~~~Qr~GR~-----~R~~---~g~~~~l~~~~~~e~~~~~~~~~k~~ 490 (494)
T 1wp9_A 421 NVLVAT-SVGEEGLDVPE-VDLVVFYEPVPSAIRSIQRRGRT-----GRHM---PGRVIILMAKGTRDEAYYWSSRQKEK 490 (494)
T ss_dssp SEEEEC-GGGGGGGGSTT-CCEEEESSCCHHHHHHHHHHTTS-----CSCC---CSEEEEEEETTSHHHHHHHHCC----
T ss_pred CEEEEC-CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHHC-----CCCC---CCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 899885-51050677135-99999959998989999998545-----8899---98899999799879999999999998
Q ss_pred HHH
Q ss_conf 999
Q gi|254780130|r 190 IQD 192 (205)
Q Consensus 190 ~~~ 192 (205)
++.
T Consensus 491 ~~~ 493 (494)
T 1wp9_A 491 IMQ 493 (494)
T ss_dssp ---
T ss_pred HCC
T ss_conf 716