HHsearch results for GI: 254780130 and protein with PDBid: 1xti_A
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.14 E-value=2.3e-10 Score=75.67 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 34334999986148997110578999999987653----------04778234899999972789869997214432332
Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205)
Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205)
.+...+..+.......+++||+........+...+ .++.....|....+.|+.++.+|++++ .+.|.|+
T Consensus 236 ~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLv~T-d~~~~Gi 314 (391)
T 1xti_A 236 EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGRGM 314 (391)
T ss_dssp GHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-CCCSSCB
T ss_pred HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCC
T ss_conf 578889888765302311355402268999999998659976875056889999899987640564399930-4545676
Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
|+.. .++||+|++|+|...|.|..||.. |.|+.-. ++.|++.. -|..+.+.+.+
T Consensus 315 Dip~-v~~VI~~~~P~~~~~y~qr~GR~G-----R~g~~g~--~i~l~~~~-~~~~~~~~i~~ 368 (391)
T 1xti_A 315 DIER-VNIAFNYDMPEDSDTYLHRVARAG-----RFGTKGL--AITFVSDE-NDAKILNDVQD 368 (391)
T ss_dssp CCTT-EEEEEESSCCSSHHHHHHHHCBCS-----SSCCCCE--EEEEECSH-HHHHHHHHHHH
T ss_pred CCCC-CCEEEEECCCCCHHHHHHHHCCCC-----CCCCCEE--EEEEECCH-HHHHHHHHHHH
T ss_conf 6888-999999799999899986724145-----7989648--99998845-68999999999