HHsearch results for GI: 254780130 and protein with PDBid: 2p6n_A
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=120.28 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
.+.|+..|.+++++. +.|+|||+++....+.|.+.|. ++.+...|..+++.|++++.+|++++ .+++.
T Consensus 39 ~~~K~~~L~~~l~~~-~~kvlIF~~~~~~~~~l~~~L~~~g~~~~~ihg~~~~~eR~~~~~~f~~g~~~ilv~t-~~~~~ 116 (191)
T 2p6n_A 39 EEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVASK 116 (191)
T ss_dssp GGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHHHT
T ss_pred CHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CEEEE
T ss_conf 289999999998448-9999999899999999999998789979999798999999999987531244378861-00350
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 322432067589726899988802255557666542026577539999983889589999999999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~ 190 (205)
|+|++. ++++|+|++||||..|.|++||+ +|.||+..+ +.|++ ++.|+.++..+.++...
T Consensus 117 Gid~~~-~~~VI~~d~p~~~~~yiQr~GR~-----gR~g~~g~~--i~~~~-~~~d~~~~~~l~~~l~~ 176 (191)
T 2p6n_A 117 GLDFPA-IQHVINYDMPEEIENYVHRIGRT-----GCSGNTGIA--TTFIN-KACDESVLMDLKALLLE 176 (191)
T ss_dssp TCCCCC-CSEEEESSCCSSHHHHHHHHTTS-----CC---CCEE--EEEEC-TTSCHHHHHHHHHHHHH
T ss_pred CCCCCC-CEEEEEECCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEEC-CHHHHHHHHHHHHHHHH
T ss_conf 257888-50899907999999998884666-----868996089--99989-80079999999999998