HHsearch results for GI: 254780130 and protein with PDBid: 2va8_A
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.59 E-value=4.3e-07 Score=57.59 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-----------ECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 477823489999997278986999721443233224320675897-----------268999888022555576665420
Q gi|254780130|r 90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-----------FSLWWDLEEHQQMIERIGVTRQRQ 158 (205)
Q Consensus 90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-----------~~~~~n~~~~~Qa~~Ri~~~r~hR 158 (205)
++.+...|..+.+.|.+|.++|++++ .+.+.|+|+. +.++||. +..|.++..|.|..||. -|
T Consensus 320 ~~l~~~eR~~ie~~f~~g~i~vLvaT-~~la~GvdlP-~~~vVI~~~~~~~~~~~~~~~~~s~~~~~Q~~GRa-----GR 392 (715)
T 2va8_A 320 AGLSKALRDLIEEGFRQRKIKVIVAT-PTLAAGVNLP-ARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA-----GR 392 (715)
T ss_dssp TTSCHHHHHHHHHHHHTTCSCEEEEC-GGGGGSSCCC-BSEEEECCC--------------CHHHHHHHHTTB-----CC
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH-----CC
T ss_conf 89999999999999977998454313-7887479988-84799935732576444555678999998885030-----36
Q ss_pred CCCCCCEEEEEEEEC
Q ss_conf 265775399999838
Q gi|254780130|r 159 AGFKRAVFVYYLIAQ 173 (205)
Q Consensus 159 ~GQ~~~v~v~~l~~~ 173 (205)
.|......++-+...
T Consensus 393 ~g~d~~G~~~i~~~~ 407 (715)
T 2va8_A 393 PGFDQIGESIVVVRD 407 (715)
T ss_dssp TTTCSCEEEEEECSC
T ss_pred CCCCCEEEEEEEECC
T ss_conf 888870389999588