HHsearch results for GI: 254780130 and protein with PDBid: 3fho_A
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
Probab=94.37 E-value=0.0061 Score=34.59 Aligned_cols=119 Identities=13% Similarity=0.217 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-CCCC---------HHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 2343349999861489971105789999999876530-4778---------23489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-QGRT---------LDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-~~~~---------~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
..|++.|.++---..--.-||||.-+.+.+.|..+.. +|-+ -..|..+.+.|.-|..+|++.+ ..-+-|
T Consensus 342 ehkynvlvelyglltigqsiifckkkdtaeeiarrmtadghtvacltgnlegaqrdaimdsfrvgtskvlvtt-nviarg 420 (508)
T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT-NVIARG 420 (508)
T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEEC-C-----
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHEECCCCEEEEEC-CEEECC
T ss_conf 4333308987646532857899825772999999745699578885178420346666765124652499981-214226
Q ss_pred HHHHHHCCEEEEECCCCC------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHH
Q ss_conf 224320675897268999------888022555576665420265775399999838895899
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWD------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n------~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~ 179 (205)
++.. ..|.++.||.|.. |..|...++|- -|+|... |-+-...-+.||||-
T Consensus 421 idvs-qvnlvvnydmpldqagrpdpqtylhrigrt-----grfgrvg-vsinfvhdkksweem 476 (508)
T 3fho_A 421 IDVS-QVNLVVNYDMPLDQAGRPDPQTYLHRIGRT-----GRFGRVG-VSINFVHDKKSWEEM 476 (508)
T ss_dssp CCCT-TCCEEEC----CC-----CTHHHHHTTSCC-----C-----C-EEEEEECTTTSSSSH
T ss_pred CCHH-HEEEEEECCCCCCCCCCCCHHHHHHHCCCC-----CCCCEEE-EEEEEEECCCCHHHH
T ss_conf 6642-456899358860014898768899873456-----7454036-789875255579998