HHsearch results for GI: 254780130 and protein with PDBid: 3hgt_A
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.95 E-value=8.9e-30 Score=183.07 Aligned_cols=180 Identities=8% Similarity=-0.031 Sum_probs=130.1
Q ss_pred HHHHHHHH----HHHHHHCCC----CEEHHHHHHHHHHHHHHCCCCHHCCCCCCC-----------CCCCHHHHHHHHHH
Q ss_conf 35899999----999973578----320999999999998860770003445654-----------20572343349999
Q gi|254780130|r 2 KQYHKFQR----ELYCDLQGE----NIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVI 62 (205)
Q Consensus 2 k~Y~~l~~----~~~~~~~~~----~i~a~~~~~~~~kL~Ql~~g~~~~d~~~~~-----------~~~~~~Kl~~l~~i 62 (205)
+.|+.+.. +...+++.. .....+....+++|+|+|+||....++... ....|.|+..|.++
T Consensus 38 ~lY~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~l~~Lr~icnHP~Ll~~~~~~~~~~~~~~~~~l~~~S~K~~~l~~l 117 (328)
T 3hgt_A 38 ELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDL 117 (328)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHH
T ss_conf 99999999769999988604776412578899999999998828905145763456644332146778658209999999
Q ss_pred HHHC--CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf 8614--89971105789999999876530----------47782348999999727898699972144323322432067
Q gi|254780130|r 63 IEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130 (205)
Q Consensus 63 i~~~--~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~ 130 (205)
++.. .|.+++|||||...++.|+..+. |......|......|+. ...+++++..+||.|+||+ +++
T Consensus 118 l~~~~~~~~kvlIfsq~~~~Ldlle~~l~~~~~~~~rldG~t~~~~r~~~~~~~~~-~~~~~l~s~~~~~~glnl~-~ad 195 (328)
T 3hgt_A 118 INLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTV-HLFSSEGINFTKYPIKSKA-RFD 195 (328)
T ss_dssp HHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------CCSEEE-EEEESSCCCTTTSCCCCCS-CCS
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCC-CCC
T ss_conf 99987469759999786899999999999779708996499977888888760286-5027998986178777664-488
Q ss_pred EEEEECCCCCHHH---HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 5897268999888---022555576665420265775399999838895899999999999
Q gi|254780130|r 131 ILVFFSLWWDLEE---HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205)
Q Consensus 131 ~vI~~~~~~n~~~---~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205)
+||.||++|||.. ..||.+|. ||+||+++|.||+|++.||||+.++.....|.
T Consensus 196 ~VI~~D~~wNP~~~~~~~qa~~r~-----~R~Gq~k~v~V~RLv~~~TiEh~~l~~~~~k~ 251 (328)
T 3hgt_A 196 MLICLDTTVDTSQKDIQYLLQYKR-----ERKGLERYAPIVRLVAINSIDHCRLFFGKKFD 251 (328)
T ss_dssp EEEECSTTCCTTSHHHHHHHCCC--------------CCEEEEEETTSHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCCCCHHHHHHHHHH-----HCCCCCCEEEEEEEECCCCHHHHHHHHCCCCC
T ss_conf 899958988989746999999876-----33689845589999708999999998112443