HHsearch results for GI: 254780130 and protein with PDBid: 3i5x_A

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A*
Probab=99.29  E-value=1.7e-11  Score=81.88  Aligned_cols=114  Identities=12%  Similarity=0.137  Sum_probs=86.1

Q ss_pred             HHHHCCCCCEEEHHHHHHHHHHHHHHHH-------------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             9861489971105789999999876530-------------477823489999997278986999721443233224320
Q gi|254780130|r   62 IIEKANAAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG  128 (205)
Q Consensus        62 ii~~~~~~kviVf~~f~~~l~~l~~~~~-------------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a  128 (205)
                      +.+...+.++|||++.....+.+...|.             ++.....|..+.+.|.+|+.+|++++ .+++.|||+. .
T Consensus       333 i~~~~~~~k~iIF~~t~~~a~~l~~~L~~~~~~~~~v~~lhg~~~~~~R~~i~~~F~~g~~~ILVaT-dv~~~GiDip-~  410 (563)
T 3i5x_A          333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-DVGARGMDFP-N  410 (563)
T ss_dssp             HHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-GGGTSSCCCT-T
T ss_pred             HHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC-CCHHCCCCCC-C
T ss_conf             8851367618996253999999999998630269626732589999999999999877997399984-6233266666-8


Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             6758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r  129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT  186 (205)
Q Consensus       129 ~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~  186 (205)
                      .++||+|++|+++..|.|.+||.     -|.|++-.+  +.|++.+  |...++.+.+
T Consensus       411 v~~VI~~~~P~s~~~yiqriGR~-----gR~G~~G~~--i~~~~~~--e~~~~~~l~~  459 (563)
T 3i5x_A          411 VHEVLQIGVPSELANYIHRIGRT-----ARSGKEGSS--VLFICKD--ELPFVRELED  459 (563)
T ss_dssp             CCEEEEESCCSSTTHHHHHHTTS-----SCTTCCEEE--EEEEEGG--GHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHC-----CCCCCCEEE--EEEECHH--HHHHHHHHHH
T ss_conf             98899969998999999652232-----379994579--9997578--9999999998