HHsearch results for GI: 254780130 and protein with PDBid: 3i5x_A
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A*
Probab=99.29 E-value=1.7e-11 Score=81.88 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=86.1
Q ss_pred HHHHCCCCCEEEHHHHHHHHHHHHHHHH-------------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 9861489971105789999999876530-------------477823489999997278986999721443233224320
Q gi|254780130|r 62 IIEKANAAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128 (205)
Q Consensus 62 ii~~~~~~kviVf~~f~~~l~~l~~~~~-------------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a 128 (205)
+.+...+.++|||++.....+.+...|. ++.....|..+.+.|.+|+.+|++++ .+++.|||+. .
T Consensus 333 i~~~~~~~k~iIF~~t~~~a~~l~~~L~~~~~~~~~v~~lhg~~~~~~R~~i~~~F~~g~~~ILVaT-dv~~~GiDip-~ 410 (563)
T 3i5x_A 333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-DVGARGMDFP-N 410 (563)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-GGGTSSCCCT-T
T ss_pred HHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC-CCHHCCCCCC-C
T ss_conf 8851367618996253999999999998630269626732589999999999999877997399984-6233266666-8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 6758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 129 ~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
.++||+|++|+++..|.|.+||. -|.|++-.+ +.|++.+ |...++.+.+
T Consensus 411 v~~VI~~~~P~s~~~yiqriGR~-----gR~G~~G~~--i~~~~~~--e~~~~~~l~~ 459 (563)
T 3i5x_A 411 VHEVLQIGVPSELANYIHRIGRT-----ARSGKEGSS--VLFICKD--ELPFVRELED 459 (563)
T ss_dssp CCEEEEESCCSSTTHHHHHHTTS-----SCTTCCEEE--EEEEEGG--GHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHC-----CCCCCCEEE--EEEECHH--HHHHHHHHHH
T ss_conf 98899969998999999652232-----379994579--9997578--9999999998