Query         gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs    122 out of 3331
Neff          7.3 
Searched_HMMs 23785
Date          Sun May 22 16:48:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780130.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1z5z_A Helicase of the SNF2/RA 100.0 6.6E-39 2.8E-43  233.6  13.0  190    2-198    43-248 (271)
  2 3mwy_W Chromo domain-containin 100.0 1.2E-39   5E-44  237.7   8.6  169   23-197   507-707 (800)
  3 1z3i_X Similar to RAD54-like;  100.0 6.2E-39 2.6E-43  233.7  12.2  190    2-197   325-551 (644)
  4 1z63_A Helicase of the SNF2/RA 100.0   1E-34 4.2E-39  210.5   7.3  188    3-197   273-476 (500)
  5 3dmq_A RNA polymerase-associat 100.0 2.4E-31   1E-35  191.7  11.9  135   50-190   485-631 (968)
  6 3hgt_A HDA1 complex subunit 3; 100.0 8.9E-30 3.7E-34  183.1   3.4  180    2-188    38-251 (328)
  7 1wp9_A ATP-dependent RNA helic  99.8 2.9E-20 1.2E-24  130.5   9.8  131   52-192   341-493 (494)
  8 2fwr_A DNA repair protein RAD2  99.8 9.5E-20   4E-24  127.6   6.9  125   52-183   333-463 (472)
  9 2hjv_A ATP-dependent RNA helic  99.8 8.7E-19 3.6E-23  122.3  11.7  126   52-188    19-154 (163)
 10 3eaq_A Heat resistant RNA depe  99.8 1.5E-18 6.3E-23  121.0  11.0  125   52-187    15-149 (212)
 11 2p6n_A ATP-dependent RNA helic  99.8   2E-18 8.4E-23  120.3  11.4  128   52-190    39-176 (191)
 12 1t5i_A C_terminal domain of A   99.7 5.3E-17 2.2E-21  112.4  12.7  127   52-188    15-151 (172)
 13 3i32_A Heat resistant RNA depe  99.7 9.9E-18 4.1E-22  116.4   8.7  124   52-186    12-145 (300)
 14 1fuk_A Eukaryotic initiation f  99.6 9.1E-16 3.8E-20  105.6  10.6  122   52-184    14-145 (165)
 15 2jgn_A DBX, DDX3, ATP-dependen  99.6   7E-16   3E-20  106.2   5.6  114   52-174    29-153 (185)
 16 3gfp_A DEAD box protein 5; mRN  99.6 6.7E-15 2.8E-19  100.8   9.1  112   53-173    22-149 (189)
 17 2rb4_A ATP-dependent RNA helic  99.5 1.2E-13 5.2E-18   93.8  10.1  124   53-187    19-158 (175)
 18 3eiq_A Eukaryotic initiation f  99.4 9.8E-13 4.1E-17   88.8   8.5  122   53-185   265-396 (414)
 19 2j0s_A ATP-dependent RNA helic  99.4 4.6E-12 1.9E-16   85.1  10.7  122   53-185   261-392 (410)
 20 3fht_A ATP-dependent RNA helic  99.3 1.4E-11 5.8E-16   82.5  10.6  124   53-186   251-390 (412)
 21 3i5x_A ATP-dependent RNA helic  99.3 1.7E-11 7.3E-16   81.9  10.0  114   62-186   333-459 (563)
 22 1oyw_A RECQ helicase, ATP-depe  99.3 1.6E-11 6.6E-16   82.1   9.3  109   54-169   222-340 (523)
 23 1s2m_A Putative ATP-dependent   99.3 4.9E-11 2.1E-15   79.4  10.5  117   58-185   248-374 (400)
 24 1hv8_A Putative ATP-dependent   99.2 1.4E-10 6.1E-15   76.8  11.6  110   66-186   236-355 (367)
 25 2db3_A ATP-dependent RNA helic  99.2 3.4E-10 1.4E-14   74.7  12.7  100   66-174   298-407 (434)
 26 2z0m_A 337AA long hypothetical  99.2   1E-10 4.2E-15   77.7   9.3  111   57-176   209-325 (337)
 27 1xti_A Probable ATP-dependent   99.1 2.3E-10 9.7E-15   75.7   9.4  123   54-186   236-368 (391)
 28 2v1x_A ATP-dependent DNA helic  99.1   1E-10 4.4E-15   77.6   7.6   99   64-169   263-371 (591)
 29 3fmp_B ATP-dependent RNA helic  99.1 6.8E-12 2.9E-16   84.1   0.0  112   53-173   318-445 (479)
 30 2oca_A DAR protein, ATP-depend  99.1 4.3E-10 1.8E-14   74.2   8.6  103   67-175   346-459 (510)
 31 2i4i_A ATP-dependent RNA helic  99.1 6.5E-10 2.7E-14   73.2   8.5  113   64-187   272-394 (417)
 32 1fuu_A Yeast initiation factor  99.1 1.4E-11 5.9E-16   82.4   0.0  121   54-185   245-375 (394)
 33 2xgj_A ATP-dependent RNA helic  98.9 8.5E-09 3.6E-13   67.0  10.5   84   90-180   414-505 (1010)
 34 3l9o_A ATP-dependent RNA helic  98.7 1.2E-07   5E-12   60.7   9.7   83   90-179   512-602 (1108)
 35 2va8_A SSO2462, SKI2-type heli  98.6 4.3E-07 1.8E-11   57.6  10.2   77   90-173   320-407 (715)
 36 2p6r_A Afuhel308 helicase; pro  98.5 3.1E-07 1.3E-11   58.3   8.1   81   90-177   304-391 (702)
 37 2zj8_A DNA helicase, putative   97.9 3.2E-05 1.4E-09   47.2   7.2   82   90-178   302-391 (720)
 38 1gm5_A RECG; helicase, replica  97.9 2.5E-06   1E-10   53.4   1.4   87   89-186   620-707 (780)
 39 2jlq_A Serine protease subunit  97.8 3.2E-05 1.3E-09   47.3   6.1   93   68-168   188-307 (451)
 40 3h1t_A Type I site-specific re  97.7 9.4E-05   4E-09   44.6   7.5   99   67-172   438-559 (590)
 41 1yks_A Genome polyprotein [con  97.7   3E-05 1.3E-09   47.3   4.0   91   67-165   176-291 (440)
 42 2eyq_A TRCF, transcription-rep  97.6 9.5E-05   4E-09   44.6   5.5   94   67-167   811-917 (1151)
 43 2whx_A Serine protease/ntpase/  97.5 0.00024 9.9E-09   42.4   6.2   94   68-169   355-475 (618)
 44 2v6i_A RNA helicase; membrane,  97.4  0.0002 8.4E-09   42.8   5.5   99   67-173   170-292 (431)
 45 2z83_A Helicase/nucleoside tri  97.4 3.7E-05 1.6E-09   46.9   1.4  100   59-168   183-309 (459)
 46 2wv9_A Flavivirin protease NS2  97.1 0.00019 8.1E-09   42.9   2.2   81   68-151   410-516 (673)
 47 3jux_A Protein translocase sub  96.5   0.015 6.1E-07   32.5   8.5  110   53-168   457-583 (822)
 48 2fsf_A Preprotein translocase   96.4   0.015 6.3E-07   32.4   7.8  114   53-174   424-584 (853)
 49 1nkt_A Preprotein translocase   96.2   0.025 1.1E-06   31.2   8.3  109   53-168   443-613 (922)
 50 2w00_A HSDR, R.ECOR124I; ATP-b  95.9   0.021 8.9E-07   31.6   6.6   79   95-184   636-716 (1038)
 51 1tf5_A Preprotein translocase   95.9   0.036 1.5E-06   30.3   7.7  114   53-174   415-546 (844)
 52 3kqn_A Serine protease/ntpase/  95.1   0.006 2.5E-07   34.7   1.4   99   66-174   171-291 (437)
 53 2vl7_A XPD; helicase, unknown   94.8   0.095   4E-06   28.0   7.0   81   59-140   376-464 (540)
 54 3fho_A ATP-dependent RNA helic  94.4  0.0061 2.6E-07   34.6   0.1  119   53-179   342-476 (508)
 55 2vsf_A XPD, DNA repair helicas  93.9    0.27 1.1E-05   25.5   9.5   82   58-140   421-510 (602)
 56 1c4o_A DNA nucleotide excision  90.0    0.84 3.5E-05   22.8   8.6  126   54-187   423-565 (664)
 57 3crv_A XPD/RAD3 related DNA he  85.4     1.6 6.9E-05   21.2   5.6   81   59-140   385-474 (551)
 58 2ipc_A Preprotein translocase   36.7      19 0.00081   15.2   6.8   37   53-89    426-464 (997)
 59 2ift_A Putative methylase HI07  31.7      16 0.00069   15.6   1.6   22  131-152   127-148 (201)
 60 2xau_A PRE-mRNA-splicing facto  29.9      11 0.00046   16.6   0.5  104   66-177   301-446 (773)
 61 2fpo_A Methylase YHHF; structu  24.2      26  0.0011   14.5   1.6   22  131-152   124-145 (202)

No 1  
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase/recombination complex; 2.00A {Sulfolobus solfataricus P2} SCOP: c.37.1.19
Probab=100.00  E-value=6.6e-39  Score=233.57  Aligned_cols=190  Identities=18%  Similarity=0.225  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHHHHCCCCEEH--HHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEHHHH
Q ss_conf             358999999999735783209--99999999998860770003445654205723433499998614--89971105789
Q gi|254780130|r    2 KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF   77 (205)
Q Consensus         2 k~Y~~l~~~~~~~~~~~~i~a--~~~~~~~~kL~Ql~~g~~~~d~~~~~~~~~~~Kl~~l~~ii~~~--~~~kviVf~~f   77 (205)
                      +.|+++..+....++......  ...++.+++|+|+|+||...+... .....++|+.++.+++++.  .+.|+||||+|
T Consensus        43 ~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrqic~~p~~~~~~~-~~~~~s~Kl~~l~~il~~~~~~~~kvIVFs~~  121 (271)
T 1z5z_A           43 AMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQF  121 (271)
T ss_dssp             HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC-CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCC-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             99999999999988631251015799999999999806962310566-53001558999999999866358859999804


Q ss_pred             HHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
Q ss_conf             99999987653-----------0477823489999997278-98699972144323322432067589726899988802
Q gi|254780130|r   78 NSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ  145 (205)
Q Consensus        78 ~~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~~~-~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~  145 (205)
                      ...++.+...+           .|+.+..+|+.+++.|+++ ...|+++++++||+|+|||. |+++||++++|||..+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~i~G~~s~~~R~~~i~~f~~~~~~~vl~~~~~~~~~GlnL~~-a~~vi~~d~~wn~~~~~  200 (271)
T 1z5z_A          122 VDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPAVED  200 (271)
T ss_dssp             HHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTT-CSEEEECSCCSCTTTC-
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHH-HHHHHHCCCCCCHHHHH
T ss_conf             08999999999985498479996753088778888643303540235651000166765244-31222207899978999


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             25555766654202657753999998388958999999999999999999999
Q gi|254780130|r  146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL  198 (205)
Q Consensus       146 Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~~  198 (205)
                      ||++|+     ||+||+++|.||+|+++||||++|++++..|..+++.+++..
T Consensus       201 Qa~~R~-----~R~GQ~~~v~v~~li~~~Tiee~i~~~l~~K~~l~~~~~~~~  248 (271)
T 1z5z_A          201 QATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG  248 (271)
T ss_dssp             ------------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGT
T ss_pred             HHCCCC-----CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             881888-----666898733999987489999999999999999999986288


No 2  
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00  E-value=1.2e-39  Score=237.71  Aligned_cols=169  Identities=18%  Similarity=0.301  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHCCCCCCC------------------CCCCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHH
Q ss_conf             99999999998860770003445654------------------20572343349999861--48997110578999999
Q gi|254780130|r   23 FNSASKTVKCLQLANGAVYYDEEKHW------------------KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA   82 (205)
Q Consensus        23 ~~~~~~~~kL~Ql~~g~~~~d~~~~~------------------~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~   82 (205)
                      .+....++.|++.|+|+..++.....                  ....++|+..|.+++..  ..|+||||||+|...++
T Consensus       507 ~~l~~~~~~lr~~~~hp~l~~~~e~~~~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~KvLIFsq~~~~ld  586 (800)
T 3mwy_W          507 FSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLD  586 (800)
T ss_dssp             CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHH
T ss_conf             89999999998851577652408787776315421236778887765449999999999986007982899971479899


Q ss_pred             HHHHHH----------HCCCCHHHHHHHHHHHHCC--CCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             987653----------0477823489999997278--9869997214432332243206758972689998880225555
Q gi|254780130|r   83 RLQKAF----------PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER  150 (205)
Q Consensus        83 ~l~~~~----------~~~~~~~~r~~~i~~f~~~--~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~R  150 (205)
                      .|...|          .|+.+.+.|+.+++.|+++  ++.|||+++.|||+||||| +|++||+||++|||....||+||
T Consensus       587 ~L~~~L~~~g~~~~ridG~~~~~eR~~~i~~Fn~~~~~~~v~Llst~agg~GlNL~-~A~~VI~~D~~WNP~~~~Qa~gR  665 (800)
T 3mwy_W          587 ILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLM-TADTVVIFDSDWNPQADLQAMAR  665 (800)
T ss_dssp             HHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCT-TCCEEEESSCCSCSHHHHHHHTT
T ss_pred             HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCHH-HCCEEEEECCCCCCCHHHHHHHH
T ss_conf             99999862488636886789999999999997188999649991156526675644-48889997999892469999886


Q ss_pred             HHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76665420265775399999838895899999999999999999999
Q gi|254780130|r  151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA  197 (205)
Q Consensus       151 i~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~  197 (205)
                      +     ||+||+++|.||+|+++||+|++|++++..|..+...+++.
T Consensus       666 ~-----~RiGQ~k~V~Vyrlv~~~TvEe~i~~~~~~K~~l~~~vi~~  707 (800)
T 3mwy_W          666 A-----HRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISL  707 (800)
T ss_dssp             T-----SCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC-----
T ss_pred             H-----HHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             6-----72599974899998879988999999999999999998647


No 3  
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination/DNA binding complex; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00  E-value=6.2e-39  Score=233.73  Aligned_cols=190  Identities=21%  Similarity=0.332  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHC-CCCEEHHHHHHHHHHHHHHCCCCHHCCC---------------------CCCCCCCCHHHHHHH
Q ss_conf             358999999999735-7832099999999999886077000344---------------------565420572343349
Q gi|254780130|r    2 KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDE---------------------EKHWKEVHDEKIKAL   59 (205)
Q Consensus         2 k~Y~~l~~~~~~~~~-~~~i~a~~~~~~~~kL~Ql~~g~~~~d~---------------------~~~~~~~~~~Kl~~l   59 (205)
                      +.|+.+.+....... .........+..+++|+|+|+++....+                     ........+.|+..|
T Consensus       325 ~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L  404 (644)
T 1z3i_X          325 ELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL  404 (644)
T ss_dssp             HHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHH
T ss_conf             99999999878887530101347789999999998449998875310111210003331310000122132331489999


Q ss_pred             HHHHH---HCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCC--CEEEECHHHHHHHHH
Q ss_conf             99986---148997110578999999987653----------047782348999999727898--699972144323322
Q gi|254780130|r   60 EVIIE---KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLN  124 (205)
Q Consensus        60 ~~ii~---~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~--~Vll~~~~a~g~Gln  124 (205)
                      ..++.   ..+++|+||||+|..+++.|...+          .|+.+..+|+.+++.|++++.  .|||++++|||+|||
T Consensus       405 ~~l~~~~~~~~~~KviIFs~~~~tl~~l~~~L~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~v~LiSt~agg~GlN  484 (644)
T 1z3i_X          405 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN  484 (644)
T ss_dssp             HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred             HHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCC
T ss_conf             99998741267873899951156899999999975995899979999999999999963999997799820205450627


Q ss_pred             HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4320675897268999888022555576665420265775399999838895899999999999999999999
Q gi|254780130|r  125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA  197 (205)
Q Consensus       125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~  197 (205)
                      || +||++|+||+||||....||+||+     ||+||+++|+||+|+++||||++|++++..|..+++.+++.
T Consensus       485 L~-~A~~vI~~D~~WNp~~~~Qa~gRi-----~RiGQ~~~V~Vyrli~~gTiEe~i~~~~~~K~~l~~~v~~~  551 (644)
T 1z3i_X          485 LI-GANRLVMFDPDWNPANDEQAMARV-----WRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDE  551 (644)
T ss_dssp             CT-TEEEEEECSCCSSHHHHHHHHTTS-----SSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSC
T ss_pred             HH-HCCEEEEECCCCCHHHHHHHHHCC-----CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             65-679999959999862899998513-----04899980799999859899999999999999999988589


No 4  
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00  E-value=1e-34  Score=210.47  Aligned_cols=188  Identities=18%  Similarity=0.240  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHCCCCE--EHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEHHHHH
Q ss_conf             589999999997357832--099999999999886077000344565420572343349999861--4899711057899
Q gi|254780130|r    3 QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN   78 (205)
Q Consensus         3 ~Y~~l~~~~~~~~~~~~i--~a~~~~~~~~kL~Ql~~g~~~~d~~~~~~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~   78 (205)
                      .|+.+.++....++....  .....+..+.+++++|+++...+.... ......+......++++  .+|.|+|||++|.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~kviIfs~~~  351 (500)
T 1z63_A          273 MYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ-SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFV  351 (500)
T ss_dssp             HHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCC-CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             99999999999887430432156899999998874037244311000-12245788999999998760598699999741


Q ss_pred             HHHHHHHHHH-----------HCCCCHHHHHHHHHHHH-CCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHH
Q ss_conf             9999987653-----------04778234899999972-78986999721443233224320675897268999888022
Q gi|254780130|r   79 SDLARLQKAF-----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ  146 (205)
Q Consensus        79 ~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~-~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Q  146 (205)
                      ..++.+...+           .++.+..+|+.+++.|+ +++..|+++++++||+|||||. |+++||||+||||..+.|
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~vll~s~~a~~~GlnL~~-a~~vI~~d~~wnp~~~~Q  430 (500)
T 1z63_A          352 DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPAVEDQ  430 (500)
T ss_dssp             HHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT-CSEEEESSCCSCC---CH
T ss_pred             HHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHH-CCEEEEECCCCCCCHHHH
T ss_conf             5788888887750344430102664088899999972247786299960000466867445-899999899988335999


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             555576665420265775399999838895899999999999999999999
Q gi|254780130|r  147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA  197 (205)
Q Consensus       147 a~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~  197 (205)
                      |+||+     ||+||+++|.||+|+++||||++|++++..|..+++.+++.
T Consensus       431 ~igRi-----~R~GQ~~~v~v~~l~~~~tiee~i~~~l~~K~~~~~~~~~~  476 (500)
T 1z63_A          431 ATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS  476 (500)
T ss_dssp             HHHTT-----TTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGS
T ss_pred             HHHHH-----HCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98751-----63699971799998869988999999999999999998648


No 5  
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97  E-value=2.4e-31  Score=191.71  Aligned_cols=135  Identities=13%  Similarity=0.168  Sum_probs=117.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHCCC-CCEEEECHH
Q ss_conf             057234334999986148997110578999999987653-----------04778234899999972789-869997214
Q gi|254780130|r   50 EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEGK-IPLLFAHPA  117 (205)
Q Consensus        50 ~~~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~~~~-~~Vll~~~~  117 (205)
                      ...++|+.++.+++.+..+.|++|||+|..+++.|...+           .++.+...|..+++.|++++ ..++++++.
T Consensus       485 ~~~~~k~~~l~~~l~~~~~~KvlIF~~~~~t~~~L~~~l~~~~~~~~~~~~g~~s~~eR~~~i~~F~~~~~~~~iList~  564 (968)
T 3dmq_A          485 WNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE  564 (968)
T ss_dssp             TTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             32579999999998750698717998314899999999987369717885588888999999999860668842997133


Q ss_pred             HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             4323322432067589726899988802255557666542026577539999983889589999999999999
Q gi|254780130|r  118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI  190 (205)
Q Consensus       118 a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~  190 (205)
                      +||+|+|||. |+++|+||+||||..++|++||+     ||+||+++|.||+++++||+|+++++.+..|.+.
T Consensus       565 ag~eGlNLq~-a~~vI~~Dlpwnp~~~eQriGRi-----~RiGQ~~~v~i~~~~~~~t~e~~i~~~l~~k~~~  631 (968)
T 3dmq_A          565 IGSEGRNFQF-ASHMVMFDLPFNPDLLEQRIGRL-----DRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA  631 (968)
T ss_dssp             CTTCSSCCTT-CCEEECSSCCSSHHHHHHHHHTT-----SCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHH-CCEEEEECCCCCHHHHHHHHHCC-----CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             0368878667-98899977998864899997305-----8779997079999850979999999999999999


No 6  
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.95  E-value=8.9e-30  Score=183.07  Aligned_cols=180  Identities=8%  Similarity=-0.031  Sum_probs=130.1

Q ss_pred             HHHHHHHH----HHHHHHCCC----CEEHHHHHHHHHHHHHHCCCCHHCCCCCCC-----------CCCCHHHHHHHHHH
Q ss_conf             35899999----999973578----320999999999998860770003445654-----------20572343349999
Q gi|254780130|r    2 KQYHKFQR----ELYCDLQGE----NIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVI   62 (205)
Q Consensus         2 k~Y~~l~~----~~~~~~~~~----~i~a~~~~~~~~kL~Ql~~g~~~~d~~~~~-----------~~~~~~Kl~~l~~i   62 (205)
                      +.|+.+..    +...+++..    .....+....+++|+|+|+||....++...           ....|.|+..|.++
T Consensus        38 ~lY~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~l~~Lr~icnHP~Ll~~~~~~~~~~~~~~~~~l~~~S~K~~~l~~l  117 (328)
T 3hgt_A           38 ELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDL  117 (328)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHH
T ss_conf             99999999769999988604776412578899999999998828905145763456644332146778658209999999


Q ss_pred             HHHC--CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf             8614--89971105789999999876530----------47782348999999727898699972144323322432067
Q gi|254780130|r   63 IEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN  130 (205)
Q Consensus        63 i~~~--~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~  130 (205)
                      ++..  .|.+++|||||...++.|+..+.          |......|......|+. ...+++++..+||.|+||+ +++
T Consensus       118 l~~~~~~~~kvlIfsq~~~~Ldlle~~l~~~~~~~~rldG~t~~~~r~~~~~~~~~-~~~~~l~s~~~~~~glnl~-~ad  195 (328)
T 3hgt_A          118 INLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTV-HLFSSEGINFTKYPIKSKA-RFD  195 (328)
T ss_dssp             HHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------CCSEEE-EEEESSCCCTTTSCCCCCS-CCS
T ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCC-CCC
T ss_conf             99987469759999786899999999999779708996499977888888760286-5027998986178777664-488


Q ss_pred             EEEEECCCCCHHH---HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             5897268999888---022555576665420265775399999838895899999999999
Q gi|254780130|r  131 ILVFFSLWWDLEE---HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS  188 (205)
Q Consensus       131 ~vI~~~~~~n~~~---~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~  188 (205)
                      +||.||++|||..   ..||.+|.     ||+||+++|.||+|++.||||+.++.....|.
T Consensus       196 ~VI~~D~~wNP~~~~~~~qa~~r~-----~R~Gq~k~v~V~RLv~~~TiEh~~l~~~~~k~  251 (328)
T 3hgt_A          196 MLICLDTTVDTSQKDIQYLLQYKR-----ERKGLERYAPIVRLVAINSIDHCRLFFGKKFD  251 (328)
T ss_dssp             EEEECSTTCCTTSHHHHHHHCCC--------------CCEEEEEETTSHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHH-----HCCCCCCEEEEEEEECCCCHHHHHHHHCCCCC
T ss_conf             899958988989746999999876-----33689845589999708999999998112443


No 7  
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=99.82  E-value=2.9e-20  Score=130.49  Aligned_cols=131  Identities=21%  Similarity=0.264  Sum_probs=104.9

Q ss_pred             CHHHHHHHHHHH----HHCCCCCEEEHHHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHCCCC
Q ss_conf             723433499998----614899711057899999998765304------------------7782348999999727898
Q gi|254780130|r   52 HDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQ------------------GRTLDKDPCTIQEWNEGKI  109 (205)
Q Consensus        52 ~~~Kl~~l~~ii----~~~~~~kviVf~~f~~~l~~l~~~~~~------------------~~~~~~r~~~i~~f~~~~~  109 (205)
                      .++|++.+.+++    +..++.+++||+++....+.|...+..                  +....+|..+++.|+++++
T Consensus       341 ~~~k~~~~~~~l~~~~~~~~~~~~~if~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~l~~F~~~~~  420 (494)
T 1wp9_A          341 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF  420 (494)
T ss_dssp             SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             75089999999888875056654432113399999999999856985378623554446778899999999999977999


Q ss_pred             CEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             69997214432332243206758972689998880225555766654202657753999998388958999999999999
Q gi|254780130|r  110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST  189 (205)
Q Consensus       110 ~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~  189 (205)
                      +||+++ .+++.||||+. +++||+||+||||..+.|++||+     .|.|   +..++.|+++||+|+.+++.+..|..
T Consensus       421 ~VLi~T-~~~~~Gidl~~-~~~VI~~d~p~~~~~~~Qr~GR~-----~R~~---~g~~~~l~~~~~~e~~~~~~~~~k~~  490 (494)
T 1wp9_A          421 NVLVAT-SVGEEGLDVPE-VDLVVFYEPVPSAIRSIQRRGRT-----GRHM---PGRVIILMAKGTRDEAYYWSSRQKEK  490 (494)
T ss_dssp             SEEEEC-GGGGGGGGSTT-CCEEEESSCCHHHHHHHHHHTTS-----CSCC---CSEEEEEEETTSHHHHHHHHCC----
T ss_pred             CEEEEC-CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHHC-----CCCC---CCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             899885-51050677135-99999959998989999998545-----8899---98899999799879999999999998


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780130|r  190 IQD  192 (205)
Q Consensus       190 ~~~  192 (205)
                      ++.
T Consensus       491 ~~~  493 (494)
T 1wp9_A          491 IMQ  493 (494)
T ss_dssp             ---
T ss_pred             HCC
T ss_conf             716


No 8  
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.79  E-value=9.5e-20  Score=127.60  Aligned_cols=125  Identities=20%  Similarity=0.272  Sum_probs=108.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf             72343349999861489971105789999999876530-----4778234899999972789869997214432332243
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ  126 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-----~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~  126 (205)
                      ...|+..+.++++...+.+++||+.+.+.++.+...|.     +.....+|+.+++.|++++.+|++++ .++++|+|++
T Consensus       333 ~~~k~~~l~~ll~~~~~~~~lvf~~~~~~~~~i~~~~~~~~i~g~~~~~eR~~il~~F~~g~~~vLv~t-~~l~~GiDip  411 (472)
T 2fwr_A          333 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSS-QVLDEGIDVP  411 (472)
T ss_dssp             CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCS-SCCCSSSCSC
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCCCCCC
T ss_conf             488999999998741201466776579999976543044300378999999999999976999799880-2554152832


Q ss_pred             HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCEEEEEEEECCCHHHHHHHH
Q ss_conf             206758972689998880225555766654202657-753999998388958999999
Q gi|254780130|r  127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQR  183 (205)
Q Consensus       127 ~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~-~~v~v~~l~~~~tiEe~i~~~  183 (205)
                      . ++++|+++++||+..+.|++||+     +|.||. +.+.+|.|++++|+|+...++
T Consensus       412 ~-~~~vI~~~~~~s~~~~~Q~~GR~-----~R~~~~k~~~~vy~~v~~~t~e~~~~~r  463 (472)
T 2fwr_A          412 D-ANVGVIMSGSGSAREYIQRLGRI-----LRPSKGKKEAVLYELISRGTGEVNTARR  463 (472)
T ss_dssp             C-BSEEEEECCSSCCHHHHHHHHHS-----BCCCTTTCCEEEEEEEECSCC-------
T ss_pred             C-CCEEEEECCCCCHHHHHHHHHCC-----CCCCCCCCEEEEEEEECCCCHHHHHHHH
T ss_conf             3-99899968998989999998738-----8899999649999997799879999999


No 9  
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.79  E-value=8.7e-19  Score=122.29  Aligned_cols=126  Identities=14%  Similarity=0.241  Sum_probs=104.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      ++.|+++|.++++..++.++|||++++...+.|...+.          ++.+...|..++..|+++++++++++ .+++.
T Consensus        19 ~~~K~~~L~~ll~~~~~~k~iVF~~s~~~~~~l~~~l~~~g~~~~~~~g~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~   97 (163)
T 2hjv_A           19 EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-DVAAR   97 (163)
T ss_dssp             GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GGGTT
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEEEH-HHHHC
T ss_conf             89999999999984798859999690999999999898669838999778329889865232347856899861-45447


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             3224320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS  188 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~  188 (205)
                      |+|++. ++++|+|++|||+..|.|+.||.     .|.|+...+  +.|++.  .|+.+++.+.++.
T Consensus        98 Gid~~~-v~~Vi~~d~p~~~~~y~qr~GR~-----gR~g~~g~~--i~~~~~--~d~~~l~~ie~~~  154 (163)
T 2hjv_A           98 GIDIEN-ISLVINYDLPLEKESYVHRTGRT-----GRAGNKGKA--ISFVTA--FEKRFLADIEEYI  154 (163)
T ss_dssp             TCCCSC-CSEEEESSCCSSHHHHHHHTTTS-----SCTTCCEEE--EEEECG--GGHHHHHHHHHHH
T ss_pred             CCCCCC-CEEEEECCCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEECH--HHHHHHHHHHHHH
T ss_conf             667665-50899758986899999986715-----707997579--997478--9999999999997


No 10 
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.78  E-value=1.5e-18  Score=120.96  Aligned_cols=125  Identities=14%  Similarity=0.197  Sum_probs=101.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             7234334999986148997110578999999987653----------047782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      ...|++.|.+++....+.++||||+++...+.|...|          .++.+...|..+++.|++|++++++++ .+++.
T Consensus        15 ~~~kl~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~vlv~T-~~~~~   93 (212)
T 3eaq_A           15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-DVAAR   93 (212)
T ss_dssp             TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-TTTTC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC-HHHHC
T ss_conf             87699999999985798979999797899999999998689978998799999999999988634875478730-13432


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             322432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK  187 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K  187 (205)
                      |+|++ .++++|+|++||||..+.|++||.     +|.||...|  +.++..  .|...++.+.+.
T Consensus        94 Gid~~-~~~~Vi~~d~p~~~~~~~qr~GR~-----gR~g~~~~~--i~l~~~--~d~~~~~~i~~~  149 (212)
T 3eaq_A           94 GLDIP-QVDLVVHYRLPDRAEAYQHRSGRT-----GRAGRGGRV--VLLYGP--RERRDVEALERA  149 (212)
T ss_dssp             SSSCC-CBSEEEESSCCSSHHHHHHHHTTB-----CCCC--BEE--EEEECG--GGHHHHHHHHHH
T ss_pred             CCCCC-CCCHHHHCCCCCCHHHHHHHHCHH-----CCCCCCCEE--EEEECH--HHHHHHHHHHHH
T ss_conf             43202-641554416999988999996650-----347789879--999784--589999999999


No 11 
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.78  E-value=2e-18  Score=120.28  Aligned_cols=128  Identities=19%  Similarity=0.266  Sum_probs=105.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      .+.|+..|.+++++. +.|+|||+++....+.|.+.|.          ++.+...|..+++.|++++.+|++++ .+++.
T Consensus        39 ~~~K~~~L~~~l~~~-~~kvlIF~~~~~~~~~l~~~L~~~g~~~~~ihg~~~~~eR~~~~~~f~~g~~~ilv~t-~~~~~  116 (191)
T 2p6n_A           39 EEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVASK  116 (191)
T ss_dssp             GGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHHHT
T ss_pred             CHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CEEEE
T ss_conf             289999999998448-9999999899999999999998789979999798999999999987531244378861-00350


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             322432067589726899988802255557666542026577539999983889589999999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI  190 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~  190 (205)
                      |+|++. ++++|+|++||||..|.|++||+     +|.||+..+  +.|++ ++.|+.++..+.++...
T Consensus       117 Gid~~~-~~~VI~~d~p~~~~~yiQr~GR~-----gR~g~~g~~--i~~~~-~~~d~~~~~~l~~~l~~  176 (191)
T 2p6n_A          117 GLDFPA-IQHVINYDMPEEIENYVHRIGRT-----GCSGNTGIA--TTFIN-KACDESVLMDLKALLLE  176 (191)
T ss_dssp             TCCCCC-CSEEEESSCCSSHHHHHHHHTTS-----CC---CCEE--EEEEC-TTSCHHHHHHHHHHHHH
T ss_pred             CCCCCC-CEEEEEECCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEEC-CHHHHHHHHHHHHHHHH
T ss_conf             257888-50899907999999998884666-----868996089--99989-80079999999999998


No 12 
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73  E-value=5.3e-17  Score=112.39  Aligned_cols=127  Identities=14%  Similarity=0.202  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      .+.|+++|.++++..++.++||||++....+.|.+.+.          ++.+..+|...++.|++|+.++++++ .+++.
T Consensus        15 ~~~K~~~L~~ll~~~~~~k~iIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~l~~F~~g~~~iLi~T-d~~~~   93 (172)
T 1t5i_A           15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGR   93 (172)
T ss_dssp             GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-SCCST
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC-CHHHH
T ss_conf             69999999999982899929999794899999999998779975788999999999999999970984488603-46551


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             3224320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS  188 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~  188 (205)
                      |+|++ .++++|+|++||++..|.|+.||.     .|.|++..+  +.|++. .-|..++..+.++.
T Consensus        94 Gidi~-~~~~Vi~~d~p~~~~~yiqr~GR~-----gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~~  151 (172)
T 1t5i_A           94 GMDIE-RVNIAFNYDMPEDSDTYLHRVARA-----GRFGTKGLA--ITFVSD-ENDAKILNDVQDRF  151 (172)
T ss_dssp             TCCGG-GCSEEEESSCCSSHHHHHHHHHHH-----TGGGCCCEE--EEEECS-HHHHHHHHHHHHHH
T ss_pred             CCCCC-CCCHHHHHCCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEECC-HHHHHHHHHHHHHH
T ss_conf             67776-410245517999999998886556-----718995089--999894-57899999999997


No 13 
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP- binding, helicase, nucleotide-binding; 2.80A {Thermus thermophilus HB27}
Probab=99.73  E-value=9.9e-18  Score=116.44  Aligned_cols=124  Identities=14%  Similarity=0.207  Sum_probs=100.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      ...|++.|.+++...++.++||||+++.+.+.|...|.          ++.+...|..+++.|++++.++++++ .+++.
T Consensus        12 ~~~k~~~l~~~l~~~~~~k~iVF~~t~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~~~~~vlv~t-~~~~~   90 (300)
T 3i32_A           12 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-DVAAR   90 (300)
T ss_dssp             SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-STTTC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEECC-HHHHC
T ss_conf             77399999999985798869999898899999999998689978999699999999999999986334032111-16550


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             32243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT  186 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~  186 (205)
                      |+|+.. ++++|+|++||||..|.|++||+     +|.||+..|.+  |++..  |...++.+.+
T Consensus        91 Gid~~~-v~~vi~~d~p~~~~~y~qr~GR~-----~R~g~~~~~i~--~~~~~--e~~~~~~i~~  145 (300)
T 3i32_A           91 GLDIPQ-VDLVVHYRMPDRAEAYQHRSGRT-----GRAGRGGRVVL--LYGPR--ERRDVEALER  145 (300)
T ss_dssp             STTCCC-CSEEEESSCCSSTTHHHHHHTCC-----C-----CEEEE--EECSS--THHHHHHHHH
T ss_pred             CCCCCC-CCCEEEECCCCCHHHHHHHHCCC-----CCCCCCCEEEE--EECHH--HHHHHHHHHH
T ss_conf             466788-86126735985320678874425-----63889987999--97768--9999999999


No 14 
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.65  E-value=9.1e-16  Score=105.58  Aligned_cols=122  Identities=13%  Similarity=0.211  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      .+.|++.|.++++..++.++||||+.+...+.+...+.          +.....+|....++|++++.++++++ .+++.
T Consensus        14 ~~~Kl~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLv~T-d~~~r   92 (165)
T 1fuk_A           14 EEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-DLLAR   92 (165)
T ss_dssp             GGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-GGGTT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-HHHHC
T ss_conf             18899999999984799839999917677999999998579978999699999999999999853887557731-25436


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf             322432067589726899988802255557666542026577539999983889589999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL  184 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l  184 (205)
                      |+|++ .++++|+||+||||..|.|..||.     .|.|+...+  +.+++.+  |...+..+
T Consensus        93 GiDi~-~v~~VI~~d~P~~~~~yiqR~GR~-----gR~g~~g~~--i~~~~~~--d~~~~~~i  145 (165)
T 1fuk_A           93 GIDVQ-QVSLVINYDLPANKENYIHRIGRG-----GRFGRKGVA--INFVTNE--DVGAMREL  145 (165)
T ss_dssp             TCCCC-SCSEEEESSCCSSGGGGGGSSCSC-----C-----CEE--EEEEETT--THHHHHHH
T ss_pred             CCCCC-CCCEEEEECCCCCHHHHHHHHCCC-----CCCCCCEEE--EEEECHH--HHHHHHHH
T ss_conf             66789-998899988997899998987035-----658995599--9985589--99999999


No 15 
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, acetylation, ATP-binding, DNA-binding; 1.91A {Homo sapiens}
Probab=99.60  E-value=7e-16  Score=106.19  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=93.3

Q ss_pred             CHHHHHHHHHHHHHC-CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf             723433499998614-89971105789999999876530----------4778234899999972789869997214432
Q gi|254780130|r   52 HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCG  120 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~-~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g  120 (205)
                      ...|+.+|.+++.+. ++.++|||++.....+.|...+.          ++....+|..++..|++|+.+||++| .+++
T Consensus        29 ~~~K~~~L~~lL~~~~~~~k~iIF~~t~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~f~~g~~~vLVaT-d~~~  107 (185)
T 2jgn_A           29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-AVAA  107 (185)
T ss_dssp             GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEE-C---
T ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-CHHH
T ss_conf             078999999999833999948999797899999999998679988987089999999999999865997489850-0022


Q ss_pred             HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             332243206758972689998880225555766654202657753999998388
Q gi|254780130|r  121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN  174 (205)
Q Consensus       121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~  174 (205)
                      .|+|++. ++.||+||+||++..|.|..||.     .|.|++..  .+.|+.+.
T Consensus       108 rGiDi~~-v~~VI~yd~P~~~~~yihR~GR~-----gR~g~~g~--~i~~~~~~  153 (185)
T 2jgn_A          108 RGLDISN-VKHVINFDLPSDIEEYVHRIGRT-----GRVGNLGL--ATSFFNER  153 (185)
T ss_dssp             ---CCCS-BSEEEESSCCSSHHHHHHHHTTB-----CCTTSCEE--EEEEECGG
T ss_pred             HCCCCCC-CCEEEEECCCCCHHHHHHHHCCC-----CCCCCCEE--EEEEECHH
T ss_conf             0024688-86589924994688885662655-----65799748--99986478


No 16 
>3gfp_A DEAD box protein 5; mRNA export, ATPase, RECA-fold, ATP-binding, cytoplasm, helicase, hydrolase, membrane, mRNA transport; 1.80A {Saccharomyces cerevisiae} PDB: 2kbf_A
Probab=99.58  E-value=6.7e-15  Score=100.76  Aligned_cols=112  Identities=14%  Similarity=0.164  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|+++|.++++..+..++||||++....+.|.+.|.          +..+..+|...++.|++++.++++++ .+++.|
T Consensus        22 ~~K~~~L~~ll~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~ih~~~~~~~R~~~~~~f~~~~~~ilv~T-~~~~~G  100 (189)
T 3gfp_A           22 ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-NVLARG  100 (189)
T ss_dssp             THHHHHHHHHHHHCCCSCEEEEESCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEE-TTTTTS
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-ECCCCC
T ss_conf             9999999999973899979999797899999999998689989999799999999999988514885156664-012254


Q ss_pred             HHHHHHCCEEEEECCCC------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             22432067589726899------9888022555576665420265775399999838
Q gi|254780130|r  123 LNLQYGGNILVFFSLWW------DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ  173 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~------n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~  173 (205)
                      +|++. ++++|+|++||      ||..|.|+.||.     .|.|++..|  +.|++.
T Consensus       101 id~~~-~~~vi~~d~p~~~~~~~~~~~yiqRiGR~-----gR~g~~g~~--i~~~~~  149 (189)
T 3gfp_A          101 IDIPT-VSMVVNYDLPTLANGQADPATYIHRIGRT-----GRFGRKGVA--ISFVHD  149 (189)
T ss_dssp             TTCCC-CSEEEESSCCBCTTSCBCHHHHHHHHTTS-----SCTTCCCEE--EEEECS
T ss_pred             CCCCC-EEEEEEECCCCCCCCCCCHHHHHHHHCCC-----CCCCCCCEE--EEEECC
T ss_conf             45245-51899947986333436999999872630-----558996479--999760


No 17 
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural genomics consortium, SGC, alternative initiation ATP-binding; 2.80A {Homo sapiens}
Probab=99.50  E-value=1.2e-13  Score=93.77  Aligned_cols=124  Identities=20%  Similarity=0.292  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|++.|.++++...+.++|||++.....+.+...+.          ++.....|..+++.|++++.++++++ .+++.|
T Consensus        19 ~~K~~~L~~ll~~~~~~k~lIF~~s~~~~~~l~~~l~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLv~T-d~~~rG   97 (175)
T 2rb4_A           19 KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-NVCARG   97 (175)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-CSCCTT
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-EECCCC
T ss_conf             8999999999985899989999792888999999998779988997099999999999999766994299844-310010


Q ss_pred             HHHHHHCCEEEEECCCCC------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             224320675897268999------88802255557666542026577539999983889589999999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWD------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK  187 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n------~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K  187 (205)
                      +|+. .++++|+||+||+      +..|.|++||.     -|.|++.  .++.|++.+  |...+..+.++
T Consensus        98 iDi~-~v~~VInyd~P~~~~~~~~~~~yihRiGR~-----gR~g~~G--~~i~~~~~~--e~~~l~~ie~~  158 (175)
T 2rb4_A           98 IDVK-QVTIVVNFDLPVKQGEEPDYETYLHRIGRT-----GRFGKKG--LAFNMIEVD--ELPSLMKIQDH  158 (175)
T ss_dssp             TCCT-TEEEEEESSCCC--CCSCCHHHHHHHHCBC---------CCE--EEEEEECGG--GHHHHHHHHHH
T ss_pred             CCCC-CCCEEEEECCCCCCCCCCCHHHEEEECCCC-----CCCCCCE--EEEEEECHH--HHHHHHHHHHH
T ss_conf             2357-875899977898755556755511121323-----6389943--899997489--99999999999


No 18 
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Homo sapiens}
Probab=99.39  E-value=9.8e-13  Score=88.79  Aligned_cols=122  Identities=15%  Similarity=0.233  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             23433499998614899711057899999998765304----------77823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~----------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|++.|.++++...+.+++||++-....+.+.+.|..          +....+|..+.+.|.+++.+|++++ .+++.|
T Consensus       265 ~~k~~~l~~l~~~~~~~k~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~iLv~T-~~~~~G  343 (414)
T 3eiq_A          265 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT-DLLARG  343 (414)
T ss_dssp             TTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEEC-SSCC--
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCC
T ss_conf             8899999999984589968999554999999999998679987998189967779999999874897699986-850236


Q ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf             224320675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR  185 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~  185 (205)
                      +|+. ..++||+|++|.|+..|.|+.||..     |.|++-.|  +.|++.+  |...++.+.
T Consensus       344 lDip-~v~~VI~~~~p~s~~~yiqr~GR~g-----R~g~~G~~--~~~~~~~--d~~~l~~ie  396 (414)
T 3eiq_A          344 IDVQ-QVSLVINYDLPTNRENYIHRIGRGG-----RFGRKGVA--INMVTEE--DKRTLRDIE  396 (414)
T ss_dssp             CCGG-GCSCEEESSCCSSTHHHHHHSCCC------------CE--EEEECST--HHHHHHHHH
T ss_pred             CCCC-CCCEEEEECCCCCHHHHHHHHCCCC-----CCCCCEEE--EEEECHH--HHHHHHHHH
T ss_conf             7777-8878999699999999999855345-----89995699--9997589--999999999


No 19 
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.37  E-value=4.6e-12  Score=85.06  Aligned_cols=122  Identities=13%  Similarity=0.200  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|...+..+++..++.++||||+-....+.+.+.|.          +.....+|..+.+.|++|+.+|++++ .+.+.|
T Consensus       261 ~~k~~~~~~l~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lh~~~~~~~r~~~~~~f~~g~~~vlvaT-~~l~~G  339 (410)
T 2j0s_A          261 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-DVWARG  339 (410)
T ss_dssp             THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-GGGSSS
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC-CCHHCC
T ss_conf             7899999999984478847999666899999999998789988999678987899999999873579799982-602146


Q ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf             224320675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR  185 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~  185 (205)
                      +|+. ..++||+|++|.|+..|.|..||.     -|.|++..  ++.|++.+  |...++.+.
T Consensus       340 iDip-~v~~VI~~~~p~s~~~yiqr~GR~-----gR~g~~G~--~i~~~~~~--e~~~~~~i~  392 (410)
T 2j0s_A          340 LDVP-QVSLIINYDLPNNRELYIHRIGRS-----GRYGRKGV--AINFVKND--DIRILRDIE  392 (410)
T ss_dssp             CCCT-TEEEEEESSCCSSHHHHHHHHTTS-----SGGGCCEE--EEEEEEGG--GHHHHHHHH
T ss_pred             CCCC-CCCEEEEECCCCCHHHHHHHHCCC-----CCCCCCEE--EEEEECHH--HHHHHHHHH
T ss_conf             7866-888899969999999999885516-----67999669--99997579--999999999


No 20 
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.32  E-value=1.4e-11  Score=82.45  Aligned_cols=124  Identities=20%  Similarity=0.333  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|++.|.++++.....++||||+-....+.+...|.          ++.....|..+.+.|.+|+.+|++++ .+.+.|
T Consensus       251 ~~k~~~l~~l~~~~~~~~~iIF~~s~~~~~~~~~~L~~~g~~~~~~h~~~~~~~R~~~l~~f~~g~~~iLvaT-~~~~~G  329 (412)
T 3fht_A          251 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-NVCARG  329 (412)
T ss_dssp             HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GGGTSS
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC-CCEECC
T ss_conf             8899999999984677737999973126899999998559972012256468999999999867986188603-420135


Q ss_pred             HHHHHHCCEEEEECCCC------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             22432067589726899------98880225555766654202657753999998388958999999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWW------DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT  186 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~------n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~  186 (205)
                      +|+. ..++||+|++|.      ++..|.|..||..     |.|+.-  .++.|++.. -|..+.+.+.+
T Consensus       330 iDip-~v~~VI~~d~P~~~~~~~s~~~yiqr~GR~g-----R~g~~G--~~i~lv~~~-~~~~~~~~i~~  390 (412)
T 3fht_A          330 IDVE-QVSVVINFDLPVDKDGNPDNETYLHRIGRTG-----RFGKRG--LAVNMVDSK-HSMNILNRIQE  390 (412)
T ss_dssp             CCCT-TEEEEEESSCCBCSSSSBCHHHHHHHHTTSS-----CTTCCE--EEEEEECSH-HHHHHHHHHHH
T ss_pred             CCCC-CCCEEEEECCCCCCCCCCCHHHEEECCCCCC-----CCCCCE--EEEEEECCH-HHHHHHHHHHH
T ss_conf             6777-8888999789987455667111422032256-----799955--999998364-27999999999


No 21 
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A*
Probab=99.29  E-value=1.7e-11  Score=81.88  Aligned_cols=114  Identities=12%  Similarity=0.137  Sum_probs=86.1

Q ss_pred             HHHHCCCCCEEEHHHHHHHHHHHHHHHH-------------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             9861489971105789999999876530-------------477823489999997278986999721443233224320
Q gi|254780130|r   62 IIEKANAAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG  128 (205)
Q Consensus        62 ii~~~~~~kviVf~~f~~~l~~l~~~~~-------------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a  128 (205)
                      +.+...+.++|||++.....+.+...|.             ++.....|..+.+.|.+|+.+|++++ .+++.|||+. .
T Consensus       333 i~~~~~~~k~iIF~~t~~~a~~l~~~L~~~~~~~~~v~~lhg~~~~~~R~~i~~~F~~g~~~ILVaT-dv~~~GiDip-~  410 (563)
T 3i5x_A          333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-DVGARGMDFP-N  410 (563)
T ss_dssp             HHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-GGGTSSCCCT-T
T ss_pred             HHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC-CCHHCCCCCC-C
T ss_conf             8851367618996253999999999998630269626732589999999999999877997399984-6233266666-8


Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             6758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r  129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT  186 (205)
Q Consensus       129 ~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~  186 (205)
                      .++||+|++|+++..|.|.+||.     -|.|++-.+  +.|++.+  |...++.+.+
T Consensus       411 v~~VI~~~~P~s~~~yiqriGR~-----gR~G~~G~~--i~~~~~~--e~~~~~~l~~  459 (563)
T 3i5x_A          411 VHEVLQIGVPSELANYIHRIGRT-----ARSGKEGSS--VLFICKD--ELPFVRELED  459 (563)
T ss_dssp             CCEEEEESCCSSTTHHHHHHTTS-----SCTTCCEEE--EEEEEGG--GHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHC-----CCCCCCEEE--EEEECHH--HHHHHHHHHH
T ss_conf             98899969998999999652232-----379994579--9997578--9999999998


No 22 
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.28  E-value=1.6e-11  Score=82.13  Aligned_cols=109  Identities=13%  Similarity=0.240  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf             34334999986148997110578999999987653----------04778234899999972789869997214432332
Q gi|254780130|r   54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL  123 (205)
Q Consensus        54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl  123 (205)
                      ..++.+..++....+.++|||++-....+.+...+          .++.+...|..+.+.|.+++++|++++ .+.|.|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~IIf~~s~~~~e~la~~l~~~g~~~~~~h~~l~~~eR~~i~~~F~~g~i~vLVAT-~a~~~GI  300 (523)
T 1oyw_A          222 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-VAFGMGI  300 (523)
T ss_dssp             SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-TTSCTTT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE-CHHHCCC
T ss_conf             899999887765058847999844521999999986569752420488899999999999976998789971-1432677


Q ss_pred             HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             2432067589726899988802255557666542026577539999
Q gi|254780130|r  124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY  169 (205)
Q Consensus       124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~  169 (205)
                      |... .+.||+|++|-|++.|.|.+||.     -|.|+...|..++
T Consensus       301 D~p~-V~~VI~~~~P~s~~~Y~QriGRa-----GR~G~~g~~il~~  340 (523)
T 1oyw_A          301 NKPN-VRFVVHFDIPRNIESYYQETGRA-----GRDGLPAEAMLFY  340 (523)
T ss_dssp             CCTT-CCEEEESSCCSSHHHHHHHHTTS-----CTTSSCEEEEEEE
T ss_pred             CCCC-CCEEEEECCCCCHHHHHHHHHHC-----CCCCCCEEEEEEE
T ss_conf             6003-76799948999999999884132-----4799963699996


No 23 
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.25  E-value=4.9e-11  Score=79.41  Aligned_cols=117  Identities=19%  Similarity=0.250  Sum_probs=88.7

Q ss_pred             HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             4999986148997110578999999987653----------047782348999999727898699972144323322432
Q gi|254780130|r   58 ALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY  127 (205)
Q Consensus        58 ~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~  127 (205)
                      ....+.+...+.++|||++.....+.+...+          .+.....+|....+.|++|+.+|++++ .+.+.|+|+. 
T Consensus       248 ~~~~~~~~~~~~k~iVF~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~R~~~~~~F~~g~~~iLv~T-~~~~~GiDip-  325 (400)
T 1s2m_A          248 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-DLLTRGIDIQ-  325 (400)
T ss_dssp             HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-SCSSSSCCCT-
T ss_pred             HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE-HHHHCCCCCC-
T ss_conf             77888763257727999853441177899998679967874245799999999999876998640320-0343355556-


Q ss_pred             HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf             0675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r  128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR  185 (205)
Q Consensus       128 a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~  185 (205)
                      ..++||+|++|.|...|.|..||.     -|.|+.-  .++.|++++  |...++.+.
T Consensus       326 ~V~~VI~~~~p~s~~~yiqr~GR~-----gR~g~~G--~ai~~~~~~--d~~~~~~i~  374 (400)
T 1s2m_A          326 AVNVVINFDFPKTAETYLHRIGRS-----GRFGHLG--LAINLINWN--DRFNLYKIE  374 (400)
T ss_dssp             TEEEEEESSCCSSHHHHHHHHCBS-----SCTTCCE--EEEEEECGG--GHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCC-----CCCCCCE--EEEEEECHH--HHHHHHHHH
T ss_conf             788899969999999999673434-----4699965--999986589--999999999


No 24 
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.22  E-value=1.4e-10  Score=76.80  Aligned_cols=110  Identities=17%  Similarity=0.178  Sum_probs=85.8

Q ss_pred             CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE
Q ss_conf             489971105789999999876530----------4778234899999972789869997214432332243206758972
Q gi|254780130|r   66 ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF  135 (205)
Q Consensus        66 ~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~  135 (205)
                      ..+.++|||++-....+.+.+.|.          ++.....|..+.+.|.+++.+|++++ .+.+.|+|+. .++++|+|
T Consensus       236 ~~~~~~lIF~~~~~~~~~~~~~L~~~~~~~~~~h~~l~~~~r~~i~~~f~~g~~~vlVaT-~~l~~GiDip-~v~~Vi~~  313 (367)
T 1hv8_A          236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-DVMSRGIDVN-DLNCVINY  313 (367)
T ss_dssp             STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-TTHHHHCCCS-CCSEEEES
T ss_pred             HCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE-CHHHCCCCCC-CCCEEEEE
T ss_conf             068637999766477999999999759972544168856665321101016863189962-1212455677-88889996


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             689998880225555766654202657753999998388958999999999
Q gi|254780130|r  136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT  186 (205)
Q Consensus       136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~  186 (205)
                      ++|.|+..|.|..||.     -|.|+...+  +.|+.++  |.+.++.+.+
T Consensus       314 ~~p~s~~~~iQ~~GR~-----gR~g~~g~~--i~~~~~~--~~~~~~~i~~  355 (367)
T 1hv8_A          314 HLPQNPESYMHRIGRT-----GRAGKKGKA--ISIINRR--EYKKLRYIER  355 (367)
T ss_dssp             SCCSCHHHHHHHSTTT-----CCSSSCCEE--EEEECTT--SHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHC-----CCCCCCEEE--EEEECHH--HHHHHHHHHH
T ss_conf             9998999999996356-----569895499--9997579--9999999999


No 25 
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.20  E-value=3.4e-10  Score=74.73  Aligned_cols=100  Identities=13%  Similarity=0.211  Sum_probs=81.1

Q ss_pred             CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE
Q ss_conf             489971105789999999876530----------4778234899999972789869997214432332243206758972
Q gi|254780130|r   66 ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF  135 (205)
Q Consensus        66 ~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~  135 (205)
                      ....+++||++-....+.+.+.|.          ++....+|..+++.|.+|+.+||+++ .+++.|+|+. ..++||+|
T Consensus       298 ~~~~~~iIF~~t~~~a~~l~~~L~~~~~~~~~~h~~~~~~~R~~~l~~F~~g~~~ILvaT-d~~~rGlDip-~V~~VI~~  375 (434)
T 2db3_A          298 EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-SVASRGLDIK-NIKHVINY  375 (434)
T ss_dssp             HCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-GGGTSSCCCT-TCCEEEES
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCCCC-CCCEEEEE
T ss_conf             467349999434187999999987412453322456789999999999875998799977-8531577721-49789996


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             689998880225555766654202657753999998388
Q gi|254780130|r  136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN  174 (205)
Q Consensus       136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~  174 (205)
                      ++|.|++.|.|..||.     -|.|++..  .+.|++..
T Consensus       376 d~P~s~~~yihriGR~-----GR~g~~G~--ai~f~~~~  407 (434)
T 2db3_A          376 DMPSKIDDYVHRIGRT-----GRVGNNGR--ATSFFDPE  407 (434)
T ss_dssp             SCCSSHHHHHHHHTTS-----SCTTCCEE--EEEEECTT
T ss_pred             CCCCCHHHHHHHCCCC-----CCCCCCEE--EEEEECCH
T ss_conf             9998989986432505-----47999538--99997717


No 26 
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.19  E-value=1e-10  Score=77.67  Aligned_cols=111  Identities=17%  Similarity=0.200  Sum_probs=85.2

Q ss_pred             HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf             34999986148997110578999999987653------047782348999999727898699972144323322432067
Q gi|254780130|r   57 KALEVIIEKANAAPIIVAYHFNSDLARLQKAF------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN  130 (205)
Q Consensus        57 ~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~  130 (205)
                      ......+....+..+++|++.....+.+...+      .++.+...|+..++.|.+|+.+|++++ .+.+.|+|+. ..+
T Consensus       209 ~~~~~~~~~~~~~~~ii~~~t~~~~~~~~~~l~~~~~lh~~~~~~~R~~~~~~f~~g~~~iLvaT-~~~~~GiDip-~v~  286 (337)
T 2z0m_A          209 RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITT-DVASRGLDIP-LVE  286 (337)
T ss_dssp             HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-HHHHTTCCCC-CBS
T ss_pred             HHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE-CHHHCCCCCC-CCC
T ss_conf             56788886257862999998513579999865044340089999999999999877986589972-2554467876-888


Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCH
Q ss_conf             5897268999888022555576665420265775399999838895
Q gi|254780130|r  131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI  176 (205)
Q Consensus       131 ~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ti  176 (205)
                      ++|+|++|.|+..|.|..||.     -|.|++..|  |.|++.+..
T Consensus       287 ~VI~~~~p~s~~~~iQr~GR~-----gR~g~~g~~--~~lv~~~~~  325 (337)
T 2z0m_A          287 KVINFDAPQDLRTYIHRIGRT-----GRMGRKGEA--ITFILNEYW  325 (337)
T ss_dssp             EEEESSCCSSHHHHHHHHTTB-----CGGGCCEEE--EEEESSCHH
T ss_pred             EEEEECCCCCHHHHHHHCCCC-----CCCCCCEEE--EEEECCCHH
T ss_conf             899968999989997240104-----438995699--999888589


No 27 
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.14  E-value=2.3e-10  Score=75.67  Aligned_cols=123  Identities=15%  Similarity=0.225  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf             34334999986148997110578999999987653----------04778234899999972789869997214432332
Q gi|254780130|r   54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL  123 (205)
Q Consensus        54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl  123 (205)
                      .+...+..+.......+++||+........+...+          .++.....|....+.|+.++.+|++++ .+.|.|+
T Consensus       236 ~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLv~T-d~~~~Gi  314 (391)
T 1xti_A          236 EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGRGM  314 (391)
T ss_dssp             GHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-CCCSSCB
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCC
T ss_conf             578889888765302311355402268999999998659976875056889999899987640564399930-4545676


Q ss_pred             HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r  124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT  186 (205)
Q Consensus       124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~  186 (205)
                      |+.. .++||+|++|+|...|.|..||..     |.|+.-.  ++.|++.. -|..+.+.+.+
T Consensus       315 Dip~-v~~VI~~~~P~~~~~y~qr~GR~G-----R~g~~g~--~i~l~~~~-~~~~~~~~i~~  368 (391)
T 1xti_A          315 DIER-VNIAFNYDMPEDSDTYLHRVARAG-----RFGTKGL--AITFVSDE-NDAKILNDVQD  368 (391)
T ss_dssp             CCTT-EEEEEESSCCSSHHHHHHHHCBCS-----SSCCCCE--EEEEECSH-HHHHHHHHHHH
T ss_pred             CCCC-CCEEEEECCCCCHHHHHHHHCCCC-----CCCCCEE--EEEEECCH-HHHHHHHHHHH
T ss_conf             6888-999999799999899986724145-----7989648--99998845-68999999999


No 28 
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.14  E-value=1e-10  Score=77.56  Aligned_cols=99  Identities=14%  Similarity=0.256  Sum_probs=81.2

Q ss_pred             HHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE
Q ss_conf             6148997110578999999987653----------047782348999999727898699972144323322432067589
Q gi|254780130|r   64 EKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV  133 (205)
Q Consensus        64 ~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI  133 (205)
                      +...+.+.|||++.+...+.+.+.+          .++.....|..+.+.|.+++.+|++++ .+.|.|||+. ..+.||
T Consensus       263 ~~~~~~~~IIf~~tr~~~e~la~~L~~~g~~~~~~h~~~~~~~R~~i~~~F~~g~~~VLVAT-~a~g~GID~p-dVr~VI  340 (591)
T 2v1x_A          263 GRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT-VAFGMGIDKP-DVRFVI  340 (591)
T ss_dssp             TTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC-TTSCTTCCCS-CEEEEE
T ss_pred             HHCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CHHHCCCCCC-CCCEEE
T ss_conf             60368847999830042899999999769816887088889999999999872468879980-4433577866-786899


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             726899988802255557666542026577539999
Q gi|254780130|r  134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY  169 (205)
Q Consensus       134 ~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~  169 (205)
                      +|++|-|++.|.|..||.     -|-|+...|.+++
T Consensus       341 ~~~~P~s~~~y~Qr~GRa-----GRdG~~~~~illy  371 (591)
T 2v1x_A          341 HHSMSKSMENYYQESGRA-----GRDDMKADCILYY  371 (591)
T ss_dssp             ESSCCSSHHHHHHHHTTS-----CTTSSCEEEEEEE
T ss_pred             ECCCCCCHHHHHHHHCCC-----CCCCCCEEEEEEE
T ss_conf             928998999999883647-----7798952599997


No 29 
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens}
Probab=99.10  E-value=6.8e-12  Score=84.15  Aligned_cols=112  Identities=21%  Similarity=0.326  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             23433499998614899711057899999998765----------30477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|+..|.+++......++|||++-....+.+...          +.++.....|..+++.|++|+.+||+++ .+++.|
T Consensus       318 ~~k~~~L~~ll~~~~~~~~iIF~~s~~~~~~~~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~iLVaT-d~~~rG  396 (479)
T 3fmp_B          318 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-NVCARG  396 (479)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEC-CCHHCC
T ss_conf             8899999999984577727999721477899999997526751000454028999999999877998299979-602255


Q ss_pred             HHHHHHCCEEEEECCCC------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             22432067589726899------9888022555576665420265775399999838
Q gi|254780130|r  123 LNLQYGGNILVFFSLWW------DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ  173 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~------n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~  173 (205)
                      ||+. ..++||+|++|.      +++.|.|.+||..     |.|++-.|  +.|++.
T Consensus       397 iDip-~V~~VI~yd~P~~~~~~~~~~~yihr~GR~G-----R~g~~G~a--i~~~~~  445 (479)
T 3fmp_B          397 IDVE-QVSVVINFDLPVDKDGNPDNETYLHRIGRTG-----RFGKRGLA--VNMVDS  445 (479)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CCCC-CCCEEEEECCCCCCCCCCCCCEEEECCCCCC-----CCCCCEEE--EEEECC
T ss_conf             8724-7889999799987555676110520460353-----69995189--999773


No 30 
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.08  E-value=4.3e-10  Score=74.17  Aligned_cols=103  Identities=13%  Similarity=0.019  Sum_probs=84.8

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEEC
Q ss_conf             89971105789999999876530----------47782348999999727898699972144323322432067589726
Q gi|254780130|r   67 NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS  136 (205)
Q Consensus        67 ~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~  136 (205)
                      ++.+++||++.....+.+.+.+.          ++....+|+...+.|.+++..++++|....++|+|... .+.+|+++
T Consensus       346 ~~~~~LI~~~~~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~~~~~~~~iivaT~~vl~~GiDip~-l~~vI~~~  424 (510)
T 2oca_A          346 KDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKN-LHHVVLAH  424 (510)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCS-EEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHHCEECCCC-CCEEEEEC
T ss_conf             42346678877886999999998538838999578757789999999756998599998796554225454-68999977


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCC-CEEEEEEEECCC
Q ss_conf             899988802255557666542026577-539999983889
Q gi|254780130|r  137 LWWDLEEHQQMIERIGVTRQRQAGFKR-AVFVYYLIAQNT  175 (205)
Q Consensus       137 ~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~-~v~v~~l~~~~t  175 (205)
                      |+-|+..+.|++||+     .|.+..+ .+.+|.++-.-+
T Consensus       425 p~kS~~~~iQ~iGR~-----lR~~~~K~~~~i~D~vd~~~  459 (510)
T 2oca_A          425 GVKSKIIVLQTIGRV-----LRKHGSKTIATVWDLIDDAG  459 (510)
T ss_dssp             CCCSCCHHHHHHHHH-----HTTTCCCCCCEEEEEEEECC
T ss_pred             CCCCHHHHHHHHHCC-----CCCCCCCCEEEEEEEECCHH
T ss_conf             999889999997337-----86799985699999852677


No 31 
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.05  E-value=6.5e-10  Score=73.19  Aligned_cols=113  Identities=18%  Similarity=0.212  Sum_probs=86.6

Q ss_pred             HHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE
Q ss_conf             61489971105789999999876530----------47782348999999727898699972144323322432067589
Q gi|254780130|r   64 EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV  133 (205)
Q Consensus        64 ~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI  133 (205)
                      ....+.+++||+......+.+.+.|.          ++....+|....+.|+.|+.+|++++ .+.+.|+|+.. .++||
T Consensus       272 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~R~~~~~~~~~g~~~vLv~T-d~~~~GiDip~-v~~VI  349 (417)
T 2i4i_A          272 ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-AVAARGLDISN-VKHVI  349 (417)
T ss_dssp             TCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-HHHHTTSCCCC-EEEEE
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-CCHHCCCCCCC-CCEEE
T ss_conf             14455224554040999999999998689859996277428888666654225995399941-72214677778-87899


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             726899988802255557666542026577539999983889589999999999
Q gi|254780130|r  134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK  187 (205)
Q Consensus       134 ~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K  187 (205)
                      +|++|.|+..|.|..||.     -|.|++..  ++.|+++..  ..+.+.+.+.
T Consensus       350 ~~~~P~s~~~yiqr~GRa-----gR~g~~G~--~~~~~~~~~--~~~~~~i~~~  394 (417)
T 2i4i_A          350 NFDLPSDIEEYVHRIGRT-----GRVGNLGL--ATSFFNERN--INITKDLLDL  394 (417)
T ss_dssp             ESSCCSSHHHHHHHHTTB-----CC--CCEE--EEEEECGGG--GGGHHHHHHH
T ss_pred             EECCCCCHHHHHHHHCCC-----CCCCCCEE--EEEEECHHH--HHHHHHHHHH
T ss_conf             958999999998760404-----36999559--999973789--9999999999


No 32 
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.05  E-value=1.4e-11  Score=82.41  Aligned_cols=121  Identities=14%  Similarity=0.220  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf             34334999986148997110578999999987653----------04778234899999972789869997214432332
Q gi|254780130|r   54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL  123 (205)
Q Consensus        54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl  123 (205)
                      .|...+.++++..++.+++||++-+...+.+.+.+          .++.+..+|....+.|++++.+|++++ .+.+.|+
T Consensus       245 ~~~~~~~~i~~~~~~~k~lIf~~s~~~a~~l~~~l~~~~~~~~~~~~~l~~~~R~~~~~~f~~~~~~ilv~T-~~l~~Gi  323 (394)
T 1fuu_A          245 YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-DLLARGI  323 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC-CHHHCCC
T ss_conf             888899999972278838999556788999999887538764343578799999999999862354289740-2544357


Q ss_pred             HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf             24320675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r  124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR  185 (205)
Q Consensus       124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~  185 (205)
                      |+. ..+++|+|++|.|...|.|..||..     |.|+...|  +.|++.+  |...++.+.
T Consensus       324 Dip-~v~~VI~~~~p~s~~~yiQr~GR~g-----R~g~~g~~--~~~~~~~--d~~~~~~ie  375 (394)
T 1fuu_A          324 DVQ-QVSLVINYDLPANKENYIHRIGRGG-----RFGRKGVA--INFVTNE--DVGAMRELE  375 (394)
T ss_dssp             --------------------------------------------------------------
T ss_pred             CCC-CCCEEEEECCCCCHHHHHHHHCCCC-----CCCCCEEE--EEEECHH--HHHHHHHHH
T ss_conf             777-8878999699999999998844077-----59894599--9997579--999999999


No 33 
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.94  E-value=8.5e-09  Score=66.99  Aligned_cols=84  Identities=20%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE--------ECCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             477823489999997278986999721443233224320675897--------268999888022555576665420265
Q gi|254780130|r   90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF--------FSLWWDLEEHQQMIERIGVTRQRQAGF  161 (205)
Q Consensus        90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~--------~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ  161 (205)
                      ++.....|+.+.+.|++|.++|++++ .+++.|||+. ++++||.        ...+.++..|.|..||     |-|.|.
T Consensus       414 ~gl~~~eR~~v~~~F~~G~i~VLVaT-~vla~GIDiP-~v~vVI~~~~~~d~~~~~~~s~~~y~Q~~GR-----AGR~G~  486 (1010)
T 2xgj_A          414 SGLLPILKEVIEILFQEGFLKVLFAT-ETFSIGLNMP-AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGR-----AGRRGL  486 (1010)
T ss_dssp             TTSCHHHHHHHHHHHHTTCCSEEEEE-GGGGGSTTCC-BSEEEESCSEEECSSCEEECCHHHHHHHHTT-----BCCTTT
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEEC-HHHHCCCCCC-CEEEEEECCCCCCCCCCCCCCHHHHHHHHCC-----CCCCCC
T ss_conf             89999999999998636975899963-2876789878-8279995575357755556888888847524-----888989


Q ss_pred             CCCEEEEEEEECCCHHHHH
Q ss_conf             7753999998388958999
Q gi|254780130|r  162 KRAVFVYYLIAQNTIDELV  180 (205)
Q Consensus       162 ~~~v~v~~l~~~~tiEe~i  180 (205)
                      .....++.+...+.-++..
T Consensus       487 d~~G~vii~~~~~~~~~~~  505 (1010)
T 2xgj_A          487 DDRGIVIMMIDEKMEPQVA  505 (1010)
T ss_dssp             CSSEEEEEEECSCCCHHHH
T ss_pred             CCCEEEEEEECCCCCHHHH
T ss_conf             8844899995089888999


No 34 
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.69  E-value=1.2e-07  Score=60.67  Aligned_cols=83  Identities=20%  Similarity=0.234  Sum_probs=64.4

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE--------ECCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             477823489999997278986999721443233224320675897--------268999888022555576665420265
Q gi|254780130|r   90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF--------FSLWWDLEEHQQMIERIGVTRQRQAGF  161 (205)
Q Consensus        90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~--------~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ  161 (205)
                      ++.....|..+.+.|++|.++|++++ .+++.|||+. +.++||.        +..|.++..|.|..||-     -|.|.
T Consensus       512 ~~l~~~~R~~v~~~F~~g~i~VLvaT-~vla~GiDiP-~~~vVi~~~~k~d~~~~~~~t~~~y~Q~~GRA-----GR~G~  584 (1108)
T 3l9o_A          512 SGLLPILKEVIEILFQEGFLKVLFAT-ETFSIGLNMP-AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA-----GRRGL  584 (1108)
T ss_dssp             SCSCHHHHHHHHHHHHHTCCCEEEEE-SCCCSCCCC---CEEEESCSEEESSSCEEECCHHHHHHHHHHS-----CCSSS
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEEC-HHHHCCCCCC-CEEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-----CCCCC
T ss_conf             88999999999998737995499963-3876678878-71799954653577555669999999997157-----88999


Q ss_pred             CCCEEEEEEEECCCHHHH
Q ss_conf             775399999838895899
Q gi|254780130|r  162 KRAVFVYYLIAQNTIDEL  179 (205)
Q Consensus       162 ~~~v~v~~l~~~~tiEe~  179 (205)
                      ...-.++.++.++.-...
T Consensus       585 D~~G~~iil~~~~~~~~~  602 (1108)
T 3l9o_A          585 DDRGIVIMMIDEKMEPQV  602 (1108)
T ss_dssp             CSSEEEEEEECCCCCHHH
T ss_pred             CCCEEEEEEECCCCCHHH
T ss_conf             885389999579857889


No 35 
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.59  E-value=4.3e-07  Score=57.59  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-----------ECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             477823489999997278986999721443233224320675897-----------268999888022555576665420
Q gi|254780130|r   90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-----------FSLWWDLEEHQQMIERIGVTRQRQ  158 (205)
Q Consensus        90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-----------~~~~~n~~~~~Qa~~Ri~~~r~hR  158 (205)
                      ++.+...|..+.+.|.+|.++|++++ .+.+.|+|+. +.++||.           +..|.++..|.|..||.     -|
T Consensus       320 ~~l~~~eR~~ie~~f~~g~i~vLvaT-~~la~GvdlP-~~~vVI~~~~~~~~~~~~~~~~~s~~~~~Q~~GRa-----GR  392 (715)
T 2va8_A          320 AGLSKALRDLIEEGFRQRKIKVIVAT-PTLAAGVNLP-ARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA-----GR  392 (715)
T ss_dssp             TTSCHHHHHHHHHHHHTTCSCEEEEC-GGGGGSSCCC-BSEEEECCC--------------CHHHHHHHHTTB-----CC
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH-----CC
T ss_conf             89999999999999977998454313-7887479988-84799935732576444555678999998885030-----36


Q ss_pred             CCCCCCEEEEEEEEC
Q ss_conf             265775399999838
Q gi|254780130|r  159 AGFKRAVFVYYLIAQ  173 (205)
Q Consensus       159 ~GQ~~~v~v~~l~~~  173 (205)
                      .|......++-+...
T Consensus       393 ~g~d~~G~~~i~~~~  407 (715)
T 2va8_A          393 PGFDQIGESIVVVRD  407 (715)
T ss_dssp             TTTCSCEEEEEECSC
T ss_pred             CCCCCEEEEEEEECC
T ss_conf             888870389999588


No 36 
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.53  E-value=3.1e-07  Score=58.34  Aligned_cols=81  Identities=17%  Similarity=0.278  Sum_probs=62.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-------ECCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             477823489999997278986999721443233224320675897-------2689998880225555766654202657
Q gi|254780130|r   90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-------FSLWWDLEEHQQMIERIGVTRQRQAGFK  162 (205)
Q Consensus        90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-------~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~  162 (205)
                      ++.+...|..+.+.|.+|.++|++++ .+.+.|+|+. +.+++|.       ++.+.++..|.|..||.     -|.|..
T Consensus       304 ~~l~~~eR~~i~~~f~~g~i~VLvaT-~~l~~Gvdlp-~~~vVI~~~~~~~~~~~~~s~~~~~Q~~GRa-----GR~g~~  376 (702)
T 2p6r_A          304 AGLLNGQRRVVEDAFRRGNIKVVVAT-PTLAAGVNLP-ARRVIVRSLYRFDGYSKRIKVSEYKQMAGRA-----GRPGMD  376 (702)
T ss_dssp             TTSCHHHHHHHHHHHHTTSCCEEEEC-STTTSSSCCC-BSEEEECCSEEESSSEEECCHHHHHHHHTTB-----SCTTTC
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEC-HHHHCCCCCC-CCEEEEEECCCCCCCCCCCCHHHHEEHHHCC-----CCCCCC
T ss_conf             89999999999998645876642112-1132176799-8659998175347876789999973265506-----778888


Q ss_pred             CCEEEEEEEECCCHH
Q ss_conf             753999998388958
Q gi|254780130|r  163 RAVFVYYLIAQNTID  177 (205)
Q Consensus       163 ~~v~v~~l~~~~tiE  177 (205)
                      ..-.++.++.+..-+
T Consensus       377 ~~G~~iil~~~~~~~  391 (702)
T 2p6r_A          377 ERGEAIIIVGKRDRE  391 (702)
T ss_dssp             SCEEEEEECCGGGHH
T ss_pred             CCEEEEEEECCCCHH
T ss_conf             760799997885349


No 37 
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.90  E-value=3.2e-05  Score=47.21  Aligned_cols=82  Identities=15%  Similarity=0.141  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCC--------CCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             4778234899999972789869997214432332243206758972689--------99888022555576665420265
Q gi|254780130|r   90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW--------WDLEEHQQMIERIGVTRQRQAGF  161 (205)
Q Consensus        90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~--------~n~~~~~Qa~~Ri~~~r~hR~GQ  161 (205)
                      ++.+...|....+.|.+|+++|++++ .+.+.|+|+. +.+++|....+        .++..+.|..||.     -|.|.
T Consensus       302 ~~l~~~eR~~ve~~f~~g~i~vlv~T-~~l~~Gvdlp-~~~vVI~~~~~~~~~~~~~~~~~~~~Q~~GRa-----gR~g~  374 (720)
T 2zj8_A          302 AGLGRDERVLVEENFRKGIIKAVVAT-PTLSAGINTP-AFRVIIRDIWRYSDFGMERIPIIEVHQMLGRA-----GRPKY  374 (720)
T ss_dssp             TTSCHHHHHHHHHHHHTTSSCEEEEC-STTGGGCCCC-BSEEEECCSEECCSSSCEECCHHHHHHHHTTB-----CCTTT
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEE-HHHHCCCCCC-CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH-----CCCCC
T ss_conf             89999999999999976998268861-3554278976-75399995887787677759999999899984-----77777


Q ss_pred             CCCEEEEEEEECCCHHH
Q ss_conf             77539999983889589
Q gi|254780130|r  162 KRAVFVYYLIAQNTIDE  178 (205)
Q Consensus       162 ~~~v~v~~l~~~~tiEe  178 (205)
                      ...-.++-+.+.+....
T Consensus       375 ~~~g~~ii~~~~~~~~~  391 (720)
T 2zj8_A          375 DEVGEGIIVSTSDDPRE  391 (720)
T ss_dssp             CSEEEEEEECSSSCHHH
T ss_pred             CCCCEEEEEECCCCHHH
T ss_conf             88776999968976599


No 38 
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.89  E-value=2.5e-06  Score=53.38  Aligned_cols=87  Identities=17%  Similarity=0.259  Sum_probs=62.8

Q ss_pred             HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHH-HHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             047782348999999727898699972144323322432067589726899988802-2555576665420265775399
Q gi|254780130|r   89 PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ-QMIERIGVTRQRQAGFKRAVFV  167 (205)
Q Consensus        89 ~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~-Qa~~Ri~~~r~hR~GQ~~~v~v  167 (205)
                      .++...++|+.+++.|.+|+++||++| .+++.|+|+.. +++||.++.|.....+. |-.||.     -|.|.+..|. 
T Consensus       620 HG~m~~~eR~~im~~Fr~Gk~~ILVaT-dVierGIDiPn-v~~VIi~dap~~~lsyLHQi~GRv-----GR~g~~G~~i-  691 (780)
T 1gm5_A          620 HGRLSQEEKDRVMLEFAEGRYDILVST-TVIEVGIDVPR-ANVMVIENPERFGLAQLHQLRGRV-----GRGGQEAYCF-  691 (780)
T ss_dssp             CSSSCCSCSHHHHHHHTTTSSSBCCCS-SCCCSCSCCTT-CCEEEBCSCSSSCTTHHHHHHHTS-----CCSSTTCEEE-
T ss_pred             ECCCCHHHHHHHHHHHHCCCCCEEEEC-HHHHCCCCCCC-CCEEEEECCCCCCHHHHHHHHCCC-----CCCCCCEEEE-
T ss_conf             278999999999999985999999988-26545478325-868999799977689999872125-----7598955999-


Q ss_pred             EEEEECCCHHHHHHHHHHH
Q ss_conf             9998388958999999999
Q gi|254780130|r  168 YYLIAQNTIDELVLQRLRT  186 (205)
Q Consensus       168 ~~l~~~~tiEe~i~~~l~~  186 (205)
                       -+.+  ..++..+++|..
T Consensus       692 -ll~~--~~~~~~~~RL~~  707 (780)
T 1gm5_A          692 -LVVG--DVGEEAMERLRF  707 (780)
T ss_dssp             -CCCC--SCCHHHHHHHHH
T ss_pred             -EEEC--CCCHHHHHHHHH
T ss_conf             -9979--999799999999


No 39 
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.82  E-value=3.2e-05  Score=47.26  Aligned_cols=93  Identities=9%  Similarity=0.019  Sum_probs=63.1

Q ss_pred             CCCEEEHHHHHHHHHHHHHHHHCCCC----H--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE------
Q ss_conf             99711057899999998765304778----2--34899999972789869997214432332243206758972------
Q gi|254780130|r   68 AAPIIVAYHFNSDLARLQKAFPQGRT----L--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF------  135 (205)
Q Consensus        68 ~~kviVf~~f~~~l~~l~~~~~~~~~----~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~------  135 (205)
                      +.++|||++-....+.|...|.+...    .  +..+...+.|.+++.++++++ .+++.|+|+-  .+.||.+      
T Consensus       188 ~gk~LVFv~S~~~ae~la~~L~~~g~~v~~Lh~~l~~~~~~~~~~~~~~ilVaT-di~E~Gini~--~~~VId~~~~~~p  264 (451)
T 2jlq_A          188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-DISEMGANFR--AGRVIDPRRCLKP  264 (451)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEEC-GGGGSSCCCC--CSEEEECCEEEEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCEEEEEC-HHHHHCCCCC--CEEEEECCCCEEE
T ss_conf             999999959989999999999758983999089997999864348994299991-2365378649--7099989982666


Q ss_pred             ----C----------CCCCHHHHHHHHHHHHHHHHHCCCCC-CCEEEE
Q ss_conf             ----6----------89998880225555766654202657-753999
Q gi|254780130|r  136 ----S----------LWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVY  168 (205)
Q Consensus       136 ----~----------~~~n~~~~~Qa~~Ri~~~r~hR~GQ~-~~v~v~  168 (205)
                          +          .|-|++.+.|..||+.     |-|.. ...++|
T Consensus       265 ~~~~d~~~~~~~~~~~pis~~s~~QR~GRvG-----R~~~~~~~~yiy  307 (451)
T 2jlq_A          265 VILTDGPERVILAGPIPVTPASAAQRRGRIG-----RNPAQEDDQYVF  307 (451)
T ss_dssp             EEECSSSCEEEEEEEEECCHHHHHHHHTTSS-----CCTTCCCEEEEE
T ss_pred             EEEECCCCCEEEECCEEECHHHHHHHCCCCC-----CCCCCCCCEEEE
T ss_conf             6631677780672314418999864010779-----998788878998


No 40 
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.75  E-value=9.4e-05  Score=44.62  Aligned_cols=99  Identities=11%  Similarity=0.039  Sum_probs=67.2

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHC-----------------CCCHHHHHHHHHHH---HCCCCCEEEECHHHHHHHHHHH
Q ss_conf             899711057899999998765304-----------------77823489999997---2789869997214432332243
Q gi|254780130|r   67 NAAPIIVAYHFNSDLARLQKAFPQ-----------------GRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQ  126 (205)
Q Consensus        67 ~~~kviVf~~f~~~l~~l~~~~~~-----------------~~~~~~r~~~i~~f---~~~~~~Vll~~~~a~g~GlnL~  126 (205)
                      ...+.+||+.-....+.+...|..                 +.....++..++.|   .++..+|+++. ...++|++..
T Consensus       438 ~~~k~iif~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~k~~i~~f~~~~~~~~~Ilisv-~~L~tG~DvP  516 (590)
T 3h1t_A          438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-QLLTTGVDAP  516 (590)
T ss_dssp             TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-STTTTTCCCT
T ss_pred             CCCCEEHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEC-CHHHHHHCHH
T ss_conf             444201011889999999999998526664106751899825873558999999861315995699997-9275545858


Q ss_pred             HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEEE
Q ss_conf             2067589726899988802255557666542026---577539999983
Q gi|254780130|r  127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG---FKRAVFVYYLIA  172 (205)
Q Consensus       127 ~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G---Q~~~v~v~~l~~  172 (205)
                      . ++++||+.+.-|+..+.|++||..     |.-   .|..+.|+.++.
T Consensus       517 ~-~~~vv~~~~~~S~~~~~Q~iGR~~-----R~~~~~gK~~~~I~D~~g  559 (590)
T 3h1t_A          517 T-CKNVVLARVVNSMSEFKQIVGRGT-----RLREDYGKLWFNIIDYTG  559 (590)
T ss_dssp             T-EEEEEEESCCCCHHHHHHHHTTSC-----CCBGGGTBSCEEEEECSS
T ss_pred             H-HCEEEEECCCCCHHHHHHHHHCCC-----CCCCCCCCCEEEEEECCC
T ss_conf             6-298999527897889999996844-----658767988799994487


No 41 
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.66  E-value=3e-05  Score=47.34  Aligned_cols=91  Identities=12%  Similarity=0.014  Sum_probs=60.9

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHCCCC----H--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE-------
Q ss_conf             899711057899999998765304778----2--348999999727898699972144323322432067589-------
Q gi|254780130|r   67 NAAPIIVAYHFNSDLARLQKAFPQGRT----L--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV-------  133 (205)
Q Consensus        67 ~~~kviVf~~f~~~l~~l~~~~~~~~~----~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI-------  133 (205)
                      .+.+++||++-..+.+.|.+.|.....    .  +......+.+.+++.+|++++ .+++.|+|| . ..+||       
T Consensus       176 ~~gk~LVF~~s~~~~e~la~~L~~~g~~v~~lhg~~~~~~~~~~~~g~~~vvVaT-di~e~Gini-~-v~~VId~g~~~~  252 (440)
T 1yks_A          176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILAT-DIAEMGANL-C-VERVLDCRTAFK  252 (440)
T ss_dssp             CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEES-SSTTCCTTC-C-CSEEEECCEEEE
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEEC-CHHHCCCCC-C-CEEEEECCCCCC
T ss_conf             5898899989599999999999858981999879974887767553883299982-368636224-7-229997786321


Q ss_pred             ------------EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             ------------72689998880225555766654202657753
Q gi|254780130|r  134 ------------FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV  165 (205)
Q Consensus       134 ------------~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v  165 (205)
                                  .+..|-|++.+.|+.||.     -|-|.+..+
T Consensus       253 ~~~~~~~~~~~~~~~~pis~as~~QR~GR~-----GR~~~~~~~  291 (440)
T 1yks_A          253 PVLVDEGRKVAIKGPLRISASSAAQRRGRI-----GRNPNRDGD  291 (440)
T ss_dssp             EEEETTTTEEEEEEEEECCHHHHHHHHTTS-----SCCTTCCCE
T ss_pred             CEEECCCCCEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCE
T ss_conf             025458876798067689989998641067-----888888862


No 42 
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.58  E-value=9.5e-05  Score=44.62  Aligned_cols=94  Identities=11%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             CCCCEEEHHHHHHHH----HHHHHHHH--------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf             899711057899999----99876530--------477823489999997278986999721443233224320675897
Q gi|254780130|r   67 NAAPIIVAYHFNSDL----ARLQKAFP--------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF  134 (205)
Q Consensus        67 ~~~kviVf~~f~~~l----~~l~~~~~--------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~  134 (205)
                      .+..+.+++.+....    +.+.+.++        +.....+|+.++..|.+|+++||++| .+.+.|||... ++++|.
T Consensus       811 r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hg~m~~~~r~~~~~~F~~g~~~iLVaT-~ii~~GiDip~-v~~vii  888 (1151)
T 2eyq_A          811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-TIIETGIDIPT-ANTIII  888 (1151)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES-STTGGGSCCTT-EEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC-HHHHCCCCCCC-CCEEEE
T ss_conf             1897689953666568999999976887658886055789999999999974885099964-03423567788-857999


Q ss_pred             ECCC-CCHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             2689-99888022555576665420265775399
Q gi|254780130|r  135 FSLW-WDLEEHQQMIERIGVTRQRQAGFKRAVFV  167 (205)
Q Consensus       135 ~~~~-~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v  167 (205)
                      ++.+ +..+.+-|-.||.     -|-|....|+.
T Consensus       889 ~~a~~~~~~~lhQl~GR~-----GR~~~~~~a~l  917 (1151)
T 2eyq_A          889 ERADHFGLAQLHQLRGRV-----GRSHHQAYAWL  917 (1151)
T ss_dssp             TTTTSSCHHHHHHHHTTC-----CBTTBCEEEEE
T ss_pred             ECCCCCCHHHHHHHHHHC-----CCCCCCEEEEE
T ss_conf             357646899999885212-----54889549999


No 43 
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.46  E-value=0.00024  Score=42.43  Aligned_cols=94  Identities=6%  Similarity=-0.021  Sum_probs=61.9

Q ss_pred             CCCEEEHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE--------
Q ss_conf             99711057899999998765304778------2348999999727898699972144323322432067589--------
Q gi|254780130|r   68 AAPIIVAYHFNSDLARLQKAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV--------  133 (205)
Q Consensus        68 ~~kviVf~~f~~~l~~l~~~~~~~~~------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI--------  133 (205)
                      ..++|||++-+.+.+.|.+.|.....      .+........|.+++.+|++++ .++..|+|+ . .++||        
T Consensus       355 ~gktLVFv~S~~~aeeLA~~L~~~G~~v~~LHg~l~~~e~~k~k~g~~~IIVAT-dIaE~Gvti-d-vd~VID~g~~~k~  431 (618)
T 2whx_A          355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-DISEMGANF-R-AGRVIDPRRCLKP  431 (618)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEEC-GGGGTTCCC-C-CSEEEECCEEEEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCEEEEC-HHHHCCCEE-C-CEEEEECCCCEEE
T ss_conf             899999979889999999999758980999179998788723568996399990-674307404-8-5799989984377


Q ss_pred             --EEC----------CCCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEE
Q ss_conf             --726----------899988802255557666542026-577539999
Q gi|254780130|r  134 --FFS----------LWWDLEEHQQMIERIGVTRQRQAG-FKRAVFVYY  169 (205)
Q Consensus       134 --~~~----------~~~n~~~~~Qa~~Ri~~~r~hR~G-Q~~~v~v~~  169 (205)
                        +++          .|-+++...|+.||.     -|-| |...+++|.
T Consensus       432 vi~~d~~~~v~~l~~~piS~aSa~QR~GRv-----GR~~~~~~~~Yvy~  475 (618)
T 2whx_A          432 VILTDGPERVILAGPIPVTPASAAQRRGRI-----GRNPAQEDDQYVFS  475 (618)
T ss_dssp             EEECSSSCEEEEEEEEECCHHHHHHHHTTS-----SCCTTCCCEEEEEC
T ss_pred             EEEECCCCCCEEEEEEEECHHHHHHHCCCC-----CCCCCCCCCEEEEC
T ss_conf             774358889367311765899976400266-----89987788689987


No 44 
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.42  E-value=0.0002  Score=42.82  Aligned_cols=99  Identities=9%  Similarity=-0.002  Sum_probs=64.2

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE-----
Q ss_conf             899711057899999998765304778------234899999972789869997214432332243206758972-----
Q gi|254780130|r   67 NAAPIIVAYHFNSDLARLQKAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF-----  135 (205)
Q Consensus        67 ~~~kviVf~~f~~~l~~l~~~~~~~~~------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~-----  135 (205)
                      .+.+++||++-..+.+.+.+.|.+...      ..........|.+++.+|++++ .+++.|+|+ . ...||.+     
T Consensus       170 ~~g~iLVFv~s~~~~~~la~~L~~~g~~v~~lhg~~~~~~~~~~~~~~~~ilVaT-~i~E~GI~i-d-v~~VId~g~~~~  246 (431)
T 2v6i_A          170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITT-DISEMGANF-K-ADRVIDPRKTIK  246 (431)
T ss_dssp             CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEEC-GGGGTSCCC-C-CSEEEECCEEEE
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEEC-CHHHHCCCC-C-CEEEEECCCCCC
T ss_conf             4898799979899999999999868990999679999999998767997699978-769837244-8-608997786441


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEEEC
Q ss_conf             ------------6899988802255557666542026-5775399999838
Q gi|254780130|r  136 ------------SLWWDLEEHQQMIERIGVTRQRQAG-FKRAVFVYYLIAQ  173 (205)
Q Consensus       136 ------------~~~~n~~~~~Qa~~Ri~~~r~hR~G-Q~~~v~v~~l~~~  173 (205)
                                  ..|-|++...|..||.     -|.+ +...+++|..-+.
T Consensus       247 ~~~~~~~~~~~~~~~is~as~~QR~GR~-----GR~~~g~~~~y~y~~~~~  292 (431)
T 2v6i_A          247 PILLDGRVSMQGPIAITPASAAQRRGRI-----GRNPEKLGDIYAYSGNVS  292 (431)
T ss_dssp             EEEETTEEEEEEEEECCHHHHHHHHTTS-----SCCTTCCCCEEEECSCCC
T ss_pred             EEECCCCEEEEEEECCCHHHHHHHHHCC-----CCCCCCCCEEEEECCCCC
T ss_conf             2647999788524506899998543255-----879899615999777788


No 45 
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.39  E-value=3.7e-05  Score=46.87  Aligned_cols=100  Identities=11%  Similarity=0.022  Sum_probs=61.4

Q ss_pred             HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCC----CH--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEE
Q ss_conf             9999861489971105789999999876530477----82--34899999972789869997214432332243206758
Q gi|254780130|r   59 LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----TL--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL  132 (205)
Q Consensus        59 l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~----~~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~v  132 (205)
                      +..+.+  .+.+++||++-..+.+.+.+.|....    ..  +......+.|.+|+.+|++++ ..++.|+|+.  .+.|
T Consensus       183 ~~~i~~--~~gk~LVFv~s~~~ae~la~~L~~~g~~v~~lh~~l~~~~~~~~~~g~~~vlVAT-di~E~Gidi~--v~~V  257 (459)
T 2z83_A          183 YEWITE--YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITT-DISEMGANFG--ASRV  257 (459)
T ss_dssp             CHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEES-SCC---CCCS--CSEE
T ss_pred             HHHHHH--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCEEEEC-HHHHHCCCCC--CEEE
T ss_conf             999996--2899999979799999999999868990999689898999965337994399982-4887179779--8499


Q ss_pred             EE----------ECC----------CCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEE
Q ss_conf             97----------268----------999888022555576665420-2657753999
Q gi|254780130|r  133 VF----------FSL----------WWDLEEHQQMIERIGVTRQRQ-AGFKRAVFVY  168 (205)
Q Consensus       133 I~----------~~~----------~~n~~~~~Qa~~Ri~~~r~hR-~GQ~~~v~v~  168 (205)
                      |-          +++          |-|++...|..||.     -| .|+.-.+++|
T Consensus       258 ID~g~~~~~~~~~~~~~~~~~~~~~pis~as~~QR~GR~-----GR~~g~~~~~y~y  309 (459)
T 2z83_A          258 IDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRV-----GRNPNQVGDEYHY  309 (459)
T ss_dssp             EECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTS-----SCCTTCCCEEEEE
T ss_pred             EECCCCEEEEEEECCCCCEEEECCEEECHHHHHHHHHCC-----CCCCCCCEEEEEE
T ss_conf             979983467873268888177031566799984124157-----8888886379997


No 46 
>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.06  E-value=0.00019  Score=42.90  Aligned_cols=81  Identities=7%  Similarity=-0.009  Sum_probs=54.6

Q ss_pred             CCCEEEHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECC----
Q ss_conf             99711057899999998765304778------23489999997278986999721443233224320675897268----
Q gi|254780130|r   68 AAPIIVAYHFNSDLARLQKAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL----  137 (205)
Q Consensus        68 ~~kviVf~~f~~~l~~l~~~~~~~~~------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~----  137 (205)
                      +.+++||++-..+.+.+.+.|.+...      .+.++..+..|.+++.+|++++ .++..|+|| . ...||-+..    
T Consensus       410 ~G~iLVFv~s~~eie~la~~L~~~g~~v~~Lhs~l~~~~~~k~~~G~~kVVVAT-nIaEtGvTI-d-v~~VID~G~~vk~  486 (673)
T 2wv9_A          410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITT-DISEMGANF-G-ASRVIDCRKSVKP  486 (673)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEEC-GGGGTTCCC-C-CSEEEECCEECCE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCEEEEEEC-CHHHCCEEC-C-EEEEEECCCEEEE
T ss_conf             999999939989999999999878984999068897776734669984699972-547705521-6-0699978970566


Q ss_pred             ----------------CCCHHHHHHHHHHH
Q ss_conf             ----------------99988802255557
Q gi|254780130|r  138 ----------------WWDLEEHQQMIERI  151 (205)
Q Consensus       138 ----------------~~n~~~~~Qa~~Ri  151 (205)
                                      |-|.+...|+.||.
T Consensus       487 ~~~~~~~~~~~~l~~~pIS~ASa~QR~GRa  516 (673)
T 2wv9_A          487 TILDEGEGRVILSVPSAITSASAAQRRGRV  516 (673)
T ss_dssp             EEECSTTCEEEECCSEECCHHHHHHHHTTS
T ss_pred             EEEECCCCCEEEEEEEEECHHHHHHHCCCC
T ss_conf             764078886788655421799986415177


No 47 
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=96.52  E-value=0.015  Score=32.51  Aligned_cols=110  Identities=16%  Similarity=0.155  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861--4899711057899999998765304778--------23489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|..++.+-+..  ..|+||+|.+...+..+.|.+.|.....        ...++..+-..--..-.|.+++ ..||-|
T Consensus       457 ~~k~~ai~~~i~~~~~~grpVLIgt~sv~~se~ls~~L~~~~i~~~vLna~~~~~Ea~iia~AG~~g~VTIAT-nmAGRG  535 (822)
T 3jux_A          457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIAT-NMAGRG  535 (822)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEE-TTTTTT
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCHHEECCCCHHHHHHHHHHCCCCCEEEEEC-CCCCCC
T ss_conf             9999999999999975599579994407989999999997698131001452787899998448999299845-324699


Q ss_pred             HHHHH-------HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             22432-------06758972689998880225555766654202657753999
Q gi|254780130|r  123 LNLQY-------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY  168 (205)
Q Consensus       123 lnL~~-------a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~  168 (205)
                      .+...       +.=+||--.++-|     .+++++.++|+-|-|..-....|
T Consensus       536 tDI~l~~~v~~~GGLhVi~t~~~es-----~Rid~Ql~GR~gRQGdpG~~~~~  583 (822)
T 3jux_A          536 TDIKLGPGVAELGGLCIIGTERHES-----RRIDNQLRGRAGRQGDPGESIFF  583 (822)
T ss_dssp             CCCCCCTTTTTTTSCEEEESSCCSS-----HHHHHHHHTTSSCSSCCCEEEEE
T ss_pred             CCCCCCHHHHHCCCCEEEEECCCCH-----HHHHHHHCCCCCCCCCCCCEEEE
T ss_conf             8866635589828976864004610-----77888862702027899850587


No 48 
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.38  E-value=0.015  Score=32.45  Aligned_cols=114  Identities=18%  Similarity=0.212  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCC-CCEEEECHHHHHH
Q ss_conf             2343349999861--4899711057899999998765304778--------234899999972789-8699972144323
Q gi|254780130|r   53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGK-IPLLFAHPASCGH  121 (205)
Q Consensus        53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~-~~Vll~~~~a~g~  121 (205)
                      ..|..++.+-+..  ..|+||+|.+.....-+.|.+.|.....        ...++..+-. +.|. -.|.+++ ..||-
T Consensus       424 ~~k~~ai~~ei~~~~~~grpVLvgt~sv~~se~ls~~L~~~~i~h~vLnak~~~~Ea~Iia-~AG~~g~VTIAT-NMAGR  501 (853)
T 2fsf_A          424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVA-QAGYPAAVTIAT-NMAGR  501 (853)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHH-TTTSTTCEEEEE-SCCSS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHH-HCCCCCCEEEEC-CCCCC
T ss_conf             7889999999999997189779984249879999999987486076763233065899998-458999779841-10147


Q ss_pred             HHHHHH------------------------------------HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             322432------------------------------------06758972689998880225555766654202657753
Q gi|254780130|r  122 GLNLQY------------------------------------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV  165 (205)
Q Consensus       122 GlnL~~------------------------------------a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v  165 (205)
                      |.+..-                                    +.=+||--.++-|     .+++++.++|+-|-|..-..
T Consensus       502 GTDIkLg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVi~Ter~es-----~Rid~QlrGR~gRQGdpGss  576 (853)
T 2fsf_A          502 GTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHES-----RRIDNQLRGRSGRQGDAGSS  576 (853)
T ss_dssp             CSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSS-----HHHHHHHHTTSSGGGCCEEE
T ss_pred             CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----HHHHHHHCCCCCCCCCCCCE
T ss_conf             7575467751012210248208899999999998765566349828996576652-----26777751610026999850


Q ss_pred             EEEEEEECC
Q ss_conf             999998388
Q gi|254780130|r  166 FVYYLIAQN  174 (205)
Q Consensus       166 ~v~~l~~~~  174 (205)
                      ..| +-.+|
T Consensus       577 ~f~-lsleD  584 (853)
T 2fsf_A          577 RFY-LSMED  584 (853)
T ss_dssp             EEE-EETTS
T ss_pred             EEE-EECCH
T ss_conf             577-65661


No 49 
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.23  E-value=0.025  Score=31.20  Aligned_cols=109  Identities=17%  Similarity=0.186  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCC-CCEEEECHHHHHH
Q ss_conf             2343349999861--4899711057899999998765304778--------234899999972789-8699972144323
Q gi|254780130|r   53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGK-IPLLFAHPASCGH  121 (205)
Q Consensus        53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~-~~Vll~~~~a~g~  121 (205)
                      ..|+.++.+-+.+  ..|+||+|+|......+.|...|.....        ...++..+-. +.|. -.|.+++ ..||-
T Consensus       443 ~~k~~aii~~i~~~~~~grPVLVgt~si~~se~ls~~L~~~~i~h~vLnak~~e~Ea~IIa-~AG~~G~VTIAT-NMAGR  520 (922)
T 1nkt_A          443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIA-VAGRRGGVTVAT-NMAGR  520 (922)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHH-TTTSTTCEEEEE-TTCST
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHH-HCCCCCEEEEEE-CHHCC
T ss_conf             9999999999999996499779974229889999999997699402213002165676787-079987499970-02138


Q ss_pred             HHHHH---------------------------------------------------HHCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             32243---------------------------------------------------206758972689998880225555
Q gi|254780130|r  122 GLNLQ---------------------------------------------------YGGNILVFFSLWWDLEEHQQMIER  150 (205)
Q Consensus       122 GlnL~---------------------------------------------------~a~~~vI~~~~~~n~~~~~Qa~~R  150 (205)
                      |.+..                                                   .+.=+||--.++-|     .++++
T Consensus       521 GTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVIgTerhes-----rRiD~  595 (922)
T 1nkt_A          521 GTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHES-----RRIDN  595 (922)
T ss_dssp             TCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSS-----HHHHH
T ss_pred             CCCEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-----HHHHH
T ss_conf             7570158862022444443203564358377998887777788898887667787539828995045613-----77887


Q ss_pred             HHHHHHHCCCCCCCEEEE
Q ss_conf             766654202657753999
Q gi|254780130|r  151 IGVTRQRQAGFKRAVFVY  168 (205)
Q Consensus       151 i~~~r~hR~GQ~~~v~v~  168 (205)
                      +.++|+-|=|+.-....|
T Consensus       596 QlrGRagRQGdpGss~f~  613 (922)
T 1nkt_A          596 QLRGRSGRQGDPGESRFY  613 (922)
T ss_dssp             HHHHTSSGGGCCEEEEEE
T ss_pred             HHCCCCCCCCCCCCEEEE
T ss_conf             750532479999725998


No 50 
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2w74_B*
Probab=95.90  E-value=0.021  Score=31.61  Aligned_cols=79  Identities=13%  Similarity=0.047  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEEEE
Q ss_conf             348999999727898699972144323322432067589726899988802255557666542026--577539999983
Q gi|254780130|r   95 DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIA  172 (205)
Q Consensus        95 ~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G--Q~~~v~v~~l~~  172 (205)
                      +.+...+++|.++++++++.. ..-.+|++... .++ +|+++|.+.....||++|..     |.-  -|.-.+|..++ 
T Consensus       636 ~~~~~l~~~fk~~~~~Ilivv-dmL~TGfDvP~-l~~-lyldk~~~~~~liQaigR~n-----R~~~~~K~~g~IvD~~-  706 (1038)
T 2w00_A          636 NYYRDLAQRVKNQDIDLLIVV-GMFLTGFDAPT-LNT-LFVDKNLRYHGLMQAFSRTN-----RIYDATKTFGNIVTFR-  706 (1038)
T ss_dssp             HHHHHHHHHHHTTSSSEEEES-STTSSSCCCTT-EEE-EEEESCCCHHHHHHHHHTTC-----CCCCTTCCSEEEEESS-
T ss_pred             HHHHHHHHHHCCCCCEEEEEH-HHHHCCCCCCC-CEE-EEEECCCCCCCHHHHHHHHC-----CCCCCCCCCEEEEEEC-
T ss_conf             889999986126896299980-36435788502-407-99817888450999866743-----8777998877999956-


Q ss_pred             CCCHHHHHHHHH
Q ss_conf             889589999999
Q gi|254780130|r  173 QNTIDELVLQRL  184 (205)
Q Consensus       173 ~~tiEe~i~~~l  184 (205)
                       | +.+.+-+.+
T Consensus       707 -~-~~~~~~~a~  716 (1038)
T 2w00_A          707 -D-LERSTIDAI  716 (1038)
T ss_dssp             -C-CHHHHHHHH
T ss_pred             -C-HHHHHHHHH
T ss_conf             -6-099999999


No 51 
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 1m6n_A 1m74_A* 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.87  E-value=0.036  Score=30.34  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCCC-CCEEEECHHHHHH
Q ss_conf             2343349999861--4899711057899999998765304778----2----34899999972789-8699972144323
Q gi|254780130|r   53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEGK-IPLLFAHPASCGH  121 (205)
Q Consensus        53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~~-~~Vll~~~~a~g~  121 (205)
                      ..|+.++.+-+..  ..|++|+|++......+.+...+.....    .    ..++..+-. +.|. -.|.|++ ..||-
T Consensus       415 ~~k~~ai~~~i~~~~~~grpVLIgt~si~~se~ls~~l~~~~i~~~vLnak~~e~Ea~iIa-~AG~~G~VTIAT-nmAGR  492 (844)
T 1tf5_A          415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE-EAGQKGAVTIAT-NMAGR  492 (844)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT-TTTSTTCEEEEE-TTSST
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHH-HHCCCCEEEEEC-HHHCC
T ss_conf             4889999999999986588669998407867999999887275066652223575899999-637788699951-35428


Q ss_pred             HHHHHH-------HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             322432-------06758972689998880225555766654202657753999998388
Q gi|254780130|r  122 GLNLQY-------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN  174 (205)
Q Consensus       122 GlnL~~-------a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~  174 (205)
                      |.+...       +.=+||--.++-|     .+++++.++|+-|=|+.-....+ +-.++
T Consensus       493 GTDIkl~~~v~~~GGLhVI~T~~~es-----~Rid~Ql~GRtgRQGdpGss~~~-lsled  546 (844)
T 1tf5_A          493 GTDIKLGEGVKELGGLAVVGTERHES-----RRIDNQLRGRSGRQGDPGITQFY-LSMED  546 (844)
T ss_dssp             TCCCCCCTTSGGGTSEEEEESSCCSS-----HHHHHHHHTTSSGGGCCEEEEEE-EETTS
T ss_pred             CCCCCCCCCCHHHCCCEEEEECCCCH-----HHHHHHHHCHHCCCCCCCEEEEE-EECCH
T ss_conf             88867553103424727987234721-----77898873323037998607898-51566


No 52 
>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A
Probab=95.05  E-value=0.006  Score=34.67  Aligned_cols=99  Identities=10%  Similarity=0.043  Sum_probs=55.6

Q ss_pred             CCCCCEEEHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH---------------
Q ss_conf             4899711057899999998765304778---2348999999727898699972144323322432---------------
Q gi|254780130|r   66 ANAAPIIVAYHFNSDLARLQKAFPQGRT---LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY---------------  127 (205)
Q Consensus        66 ~~~~kviVf~~f~~~l~~l~~~~~~~~~---~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~---------------  127 (205)
                      ..+.+++||++-+.+.+.+...+.....   .-.+......+..+..++++++ .+...|+|...               
T Consensus       171 ~k~gk~lVFv~Sk~eve~La~~L~~~g~~v~~lh~~l~~~~~~~~~~~iVVAT-~i~e~Git~~~~~VIdt~~~v~~~ld  249 (437)
T 3kqn_A          171 IKGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDVSVIPTSGDVIVVAT-DALMTGFTGDFDSVIDCNTCVTQTVD  249 (437)
T ss_dssp             TSSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEEC-GGGSSSCCCCBSEEEECCEEEEEEEE
T ss_pred             HCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCEEEEEC-HHHHHCCCCCCEEEEECCCEEEEEEC
T ss_conf             24688899959899999999999858994997678999667467997599983-58883888896499989976798874


Q ss_pred             ----HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             ----06758972689998880225555766654202657753999998388
Q gi|254780130|r  128 ----GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN  174 (205)
Q Consensus       128 ----a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~  174 (205)
                          ....++.++.|.|.+.+.|+.||..     | |+..   +|++++.+
T Consensus       250 ~d~~~~~~vi~~~~P~s~~syiQR~GRtG-----R-gk~G---~y~~~~~~  291 (437)
T 3kqn_A          250 FSLDPTFTIETTTVPQDAVSRSQRRGRTG-----R-GRMG---IYRFVTPG  291 (437)
T ss_dssp             CCCSSSCEEEEEEEECBHHHHHHHHTTBC-----S-SSCE---EEEESSCC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHCCCCCCC-----C-CCCE---EEEEEECC
T ss_conf             78995278980656889889854433738-----7-9980---89999897


No 53 
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=94.78  E-value=0.095  Score=28.01  Aligned_cols=81  Identities=15%  Similarity=0.158  Sum_probs=46.0

Q ss_pred             HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH---HCC
Q ss_conf             99998614899711057899999998765304778-----2348999999727898699972144323322432---067
Q gi|254780130|r   59 LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY---GGN  130 (205)
Q Consensus        59 l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~~-----~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~---a~~  130 (205)
                      +.+++...+|. ++||..-...++.+.+.+.+...     .+......++|.+++.-+|.+...+..+|++|..   .+.
T Consensus       376 i~~~~~~~~~~-~lvlf~S~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~v~~gs~~EGvD~~g~~~~~r  454 (540)
T 2vl7_A          376 LKRIYENSSKS-VLVFFPSYEMLESVRIHLSGIPVIEENKKTRHEEVLELMKTGKYLVMLVMRAKESEGVEFREKENLFE  454 (540)
T ss_dssp             HHHHHHTCSSE-EEEEESCHHHHHHHHTTCTTSCEEESTTTCCHHHHHHHHHTSCCEEEEEC---------------CEE
T ss_pred             HHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCEEECCCEECCCCCCEE
T ss_conf             99999846787-69975869999999999669957996885449999999846995899973763606812089988563


Q ss_pred             EEEEECCCCC
Q ss_conf             5897268999
Q gi|254780130|r  131 ILVFFSLWWD  140 (205)
Q Consensus       131 ~vI~~~~~~n  140 (205)
                      .+|...+||-
T Consensus       455 ~vii~~lPf~  464 (540)
T 2vl7_A          455 SLVLAGLPYP  464 (540)
T ss_dssp             EEEEESCCCC
T ss_pred             EEEEECCCCC
T ss_conf             8999788989


No 54 
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
Probab=94.37  E-value=0.0061  Score=34.59  Aligned_cols=119  Identities=13%  Similarity=0.217  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-CCCC---------HHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530-4778---------23489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-QGRT---------LDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-~~~~---------~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|++.|.++---..--.-||||.-+.+.+.|..+.. +|-+         -..|..+.+.|.-|..+|++.+ ..-+-|
T Consensus       342 ehkynvlvelyglltigqsiifckkkdtaeeiarrmtadghtvacltgnlegaqrdaimdsfrvgtskvlvtt-nviarg  420 (508)
T 3fho_A          342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT-NVIARG  420 (508)
T ss_dssp             HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEEC-C-----
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHEECCCCEEEEEC-CEEECC
T ss_conf             4333308987646532857899825772999999745699578885178420346666765124652499981-214226


Q ss_pred             HHHHHHCCEEEEECCCCC------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHH
Q ss_conf             224320675897268999------888022555576665420265775399999838895899
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWD------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL  179 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n------~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~  179 (205)
                      ++.. ..|.++.||.|..      |..|...++|-     -|+|... |-+-...-+.||||-
T Consensus       421 idvs-qvnlvvnydmpldqagrpdpqtylhrigrt-----grfgrvg-vsinfvhdkksweem  476 (508)
T 3fho_A          421 IDVS-QVNLVVNYDMPLDQAGRPDPQTYLHRIGRT-----GRFGRVG-VSINFVHDKKSWEEM  476 (508)
T ss_dssp             CCCT-TCCEEEC----CC-----CTHHHHHTTSCC-----C-----C-EEEEEECTTTSSSSH
T ss_pred             CCHH-HEEEEEECCCCCCCCCCCCHHHHHHHCCCC-----CCCCEEE-EEEEEEECCCCHHHH
T ss_conf             6642-456899358860014898768899873456-----7454036-789875255579998


No 55 
>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum}
Probab=93.94  E-value=0.27  Score=25.52  Aligned_cols=82  Identities=12%  Similarity=0.180  Sum_probs=50.4

Q ss_pred             HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH-HC
Q ss_conf             499998614899711057899999998765304-------7782348999999727898699972144323322432-06
Q gi|254780130|r   58 ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY-GG  129 (205)
Q Consensus        58 ~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~-------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~-a~  129 (205)
                      .+.+++...+|..+|.|+.|. .++.+...+..       +.....+...++.|..+...++++-..+..+|+||.. .+
T Consensus       421 ~i~~~~~~~~g~~LVlf~Sy~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~v~~~s~~EGiDl~g~~~  499 (602)
T 2vsf_A          421 VIEDIILKVKKNTIVYFPSYS-LMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNEL  499 (602)
T ss_dssp             HHHHHHHHHCSCEEEEESSHH-HHHHHHHHCCSCCCCCCTTCCHHHHHHHHHHHHHSCCCEEEETTSGGGCC-----CCC
T ss_pred             HHHHHHHHHCCCEEEEECCHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCE
T ss_conf             999999985278299944399-9999999862655667515778889999999733798599995775023602799976


Q ss_pred             CEEEEECCCCC
Q ss_conf             75897268999
Q gi|254780130|r  130 NILVFFSLWWD  140 (205)
Q Consensus       130 ~~vI~~~~~~n  140 (205)
                      ..+|...+||-
T Consensus       500 ~~viI~~lPfp  510 (602)
T 2vsf_A          500 EMIILAGLPFP  510 (602)
T ss_dssp             CEEEESSCCCC
T ss_pred             EEEEEEECCCC
T ss_conf             79999837999


No 56 
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hyperthermostable protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus HB8} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=89.95  E-value=0.84  Score=22.77  Aligned_cols=126  Identities=14%  Similarity=0.111  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             343349999861--4899711057899999998765304778----------2348999999727898699972144323
Q gi|254780130|r   54 EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        54 ~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----------~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      ..++.|.+-+..  ..|.+|+|.+.-+.-.+.|...|.+...          .-.|..+++.+..|++.|+++. .-..+
T Consensus       423 gq~d~L~~EI~~~~~~g~rVlv~t~Tk~~aErL~e~L~d~gI~a~ylhsd~d~~er~ei~~~lr~G~~dVlvgi-nlLre  501 (664)
T 1c4o_A          423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-NLLRE  501 (664)
T ss_dssp             THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-CCCCT
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCC
T ss_conf             55578999999999779859999477678999999998779738994688624679999988607973699996-76424


Q ss_pred             HHHHHHHCCEEEEECCCC-----CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             322432067589726899-----988802255557666542026577539999983889589999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWW-----DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK  187 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~-----n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K  187 (205)
                      |+.|.. ...++..|-+-     |.....|-+||-+     |-- .-.|..|-=-..+++.+.|-++-+++
T Consensus       502 G~dlPe-v~Lv~I~daD~~GflR~~~sliq~~graa-----r~~-~g~~i~yad~~t~~~~~~~~~t~rrr  565 (664)
T 1c4o_A          502 GLDIPE-VSLVAILDADKEGFLRSERSLIQTIGRAA-----RNA-RGEVWLYADRVSEAMQRAIEETNRRR  565 (664)
T ss_dssp             TCCCTT-EEEEEETTTTSCSGGGSHHHHHHHHGGGT-----TST-TCEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCC-CEEEEEECCCCCCCCCCCHHHHHHHHHHH-----HCC-CCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             666754-01899952542243447504888888887-----446-87299980666099999999998899


No 57 
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=85.41  E-value=1.6  Score=21.18  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=42.1

Q ss_pred             HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC---HH-HHHHHHHHHHCCCCCEEEEC-HHHHHHHHHHHH----HC
Q ss_conf             99998614899711057899999998765304778---23-48999999727898699972-144323322432----06
Q gi|254780130|r   59 LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT---LD-KDPCTIQEWNEGKIPLLFAH-PASCGHGLNLQY----GG  129 (205)
Q Consensus        59 l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~~---~~-~r~~~i~~f~~~~~~Vll~~-~~a~g~GlnL~~----a~  129 (205)
                      +..+++..+|..++.|+.| ..++.+.+.+.....   .+ ......+.+++++..++++. ..+..+|++|.-    ++
T Consensus       385 i~~~~~~~~g~~lvlf~S~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~v~~~s~~EGiDl~gd~~~~l  463 (551)
T 3crv_A          385 LLKIYFQAKANVLVVFPSY-EIMDRVMSRISLPKYVESEDSSVEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLI  463 (551)
T ss_dssp             HHHHHHHCSSEEEEEESCH-HHHHHHHTTCCSSEEECCSSCCHHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESE
T ss_pred             HHHHHHHHCCCEEEEECCH-HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEECCEEECCEECCCCCCCCC
T ss_conf             9999997279759994339-999999986288455547884199999998658984999961560412301599841040


Q ss_pred             CEEEEECCCCC
Q ss_conf             75897268999
Q gi|254780130|r  130 NILVFFSLWWD  140 (205)
Q Consensus       130 ~~vI~~~~~~n  140 (205)
                      ..+|...+||-
T Consensus       464 ~~viI~~lPfp  474 (551)
T 3crv_A          464 SDVVIVGIPYP  474 (551)
T ss_dssp             EEEEEESCCCC
T ss_pred             EEEEEEECCCC
T ss_conf             28999807999


No 58 
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer, structural genomics; 2.80A {Thermus thermophilus HB8}
Probab=36.72  E-value=19  Score=15.24  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHH
Q ss_conf             2343349999861--489971105789999999876530
Q gi|254780130|r   53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP   89 (205)
Q Consensus        53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~   89 (205)
                      ..|+.++.+-+.+  ..|+||+|-|...+.-+.|...|.
T Consensus       426 ~~k~~Ai~~ei~~~~~~grPVLvgT~sIe~Se~ls~~L~  464 (997)
T 2ipc_A          426 KGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK  464 (997)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             999999999999999749988997585588899999987


No 59 
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=31.70  E-value=16  Score=15.64  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHH
Q ss_conf             5897268999888022555576
Q gi|254780130|r  131 ILVFFSLWWDLEEHQQMIERIG  152 (205)
Q Consensus       131 ~vI~~~~~~n~~~~~Qa~~Ri~  152 (205)
                      -+||+||||....+......+.
T Consensus       127 DlIFlDPPY~~~~~~~~l~~L~  148 (201)
T 2ift_A          127 DVVFLDPPFHFNLAEQAISLLC  148 (201)
T ss_dssp             EEEEECCCSSSCHHHHHHHHHH
T ss_pred             CEEEECCCCCCCHHHHHHHHHH
T ss_conf             5588579755527999999999


No 60 
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=29.94  E-value=11  Score=16.60  Aligned_cols=104  Identities=11%  Similarity=0.136  Sum_probs=50.6

Q ss_pred             CCCCCEEEHHHHHHHHHHHHHHHH----------CCC---------CHHHHHHHHHHHHCC--------CCCEEEECHHH
Q ss_conf             489971105789999999876530----------477---------823489999997278--------98699972144
Q gi|254780130|r   66 ANAAPIIVAYHFNSDLARLQKAFP----------QGR---------TLDKDPCTIQEWNEG--------KIPLLFAHPAS  118 (205)
Q Consensus        66 ~~~~kviVf~~f~~~l~~l~~~~~----------~~~---------~~~~r~~~i~~f~~~--------~~~Vll~~~~a  118 (205)
                      .....++||-.-..+++.+.+.+.          +..         .... +....-|+.+        .-+|++++ ..
T Consensus       301 ~~~G~ILVFLpg~~eI~~~~~~L~~~~~~~~~~~~~~~~~ilpL~s~l~~-~~q~~vf~~~p~~~~~~~~RKIIlaT-NI  378 (773)
T 2xau_A          301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPP-HQQQRIFEPAPESHNGRPGRKVVIST-NI  378 (773)
T ss_dssp             SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCH-HHHGGGGSCCCCCSSSSCCEEEEEEC-TH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCH-HHHHHHCCCCCCCCCCCCCCEEEEEC-CC
T ss_conf             79888687458779999999999875433200147886389866356997-87644305698777788764599842-60


Q ss_pred             HHHHHHHHHHCCEEE--------EECCCCCH-------HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHH
Q ss_conf             323322432067589--------72689998-------880225555766654202657753999998388958
Q gi|254780130|r  119 CGHGLNLQYGGNILV--------FFSLWWDL-------EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID  177 (205)
Q Consensus       119 ~g~GlnL~~a~~~vI--------~~~~~~n~-------~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiE  177 (205)
                      |-.++|+. ....||        .|++.-..       ..-.+|..|     +-|.|.+.+-.+|+|.++...+
T Consensus       379 AETSiTI~-~v~yVIDsG~~k~~~yd~~~~~~~L~~~~iSkasa~QR-----~GRAGR~~pG~CyRLyt~~~~~  446 (773)
T 2xau_A          379 AETSLTID-GIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQR-----AGRAGRTRPGKCFRLYTEEAFQ  446 (773)
T ss_dssp             HHHTCCCT-TEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHH-----HHGGGSSSSEEEEESSCHHHHH
T ss_pred             HHHCCCCC-CCEEEECCCCCEEEECCCCCCCEECCCEECCHHHHHHC-----CCCCCCCCCCEEEECCCHHHHH
T ss_conf             65322224-71499748863210004437820246310344416550-----4421578997177523799973


No 61 
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46
Probab=24.17  E-value=26  Score=14.48  Aligned_cols=22  Identities=14%  Similarity=0.105  Sum_probs=18.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHH
Q ss_conf             5897268999888022555576
Q gi|254780130|r  131 ILVFFSLWWDLEEHQQMIERIG  152 (205)
Q Consensus       131 ~vI~~~~~~n~~~~~Qa~~Ri~  152 (205)
                      -+||+||||.-..+.+....+.
T Consensus       124 DlIflDPPY~~~~~~~~l~~l~  145 (202)
T 2fpo_A          124 NIVFVDPPFRRGLLEETINLLE  145 (202)
T ss_dssp             EEEEECCSSSTTTHHHHHHHHH
T ss_pred             CEEEECCCCCCCHHHHHHHHHH
T ss_conf             6899769987545999999999


Done!