HHSEARCH alignment of GI: 254780130 and SCOP domain: d1fuka_

Alignment
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.69  E-value=9.1e-17  Score=109.77  Aligned_cols=122  Identities=13%  Similarity=0.209  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      +.|++.|.++++..++.++||||+++...+.+.+.+.          ++....+|..+.+.|++++.++|+++ .+++.|
T Consensus        12 e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~T-dv~~rG   90 (162)
T d1fuka_          12 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-DLLARG   90 (162)
T ss_dssp             GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-GGGTTT
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECC-CCCCCC
T ss_conf             7899999999984898858999988706999998886549559995167752367789998764036456515-623446


Q ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf             224320675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR  185 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~  185 (205)
                      +|++. +++||+||+|||++.|.|+.||.     .|.||+..  .+.+++.+  |......+.
T Consensus        91 iDi~~-v~~VI~~d~P~~~~~yihR~GR~-----gR~g~~g~--~i~~~~~~--d~~~~~~i~  143 (162)
T d1fuka_          91 IDVQQ-VSLVINYDLPANKENYIHRIGRG-----GRFGRKGV--AINFVTNE--DVGAMRELE  143 (162)
T ss_dssp             CCCCS-CSEEEESSCCSSGGGGGGSSCSC-----C-----CE--EEEEEETT--THHHHHHHH
T ss_pred             CCCCC-CEEEEEECCCHHHHHHHHHCCCC-----CCCCCCCE--EEEECCHH--HHHHHHHHH
T ss_conf             55777-50899934514677887650144-----54798647--99981799--999999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]