HHSEARCH alignment of GI: 254780130 and SCOP domain: d1gkub2

Alignment
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.15  E-value=4.1e-12  Score=84.04  Aligned_cols=104  Identities=21%  Similarity=0.226  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHCCCCCEEEECH---HHHHHHHH
Q ss_conf             723433499998614899711057899999998765----30477823489999997278986999721---44323322
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTIQEWNEGKIPLLFAHP---ASCGHGLN  124 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~----~~~~~~~~~r~~~i~~f~~~~~~Vll~~~---~a~g~Gln  124 (205)
                      ++.|+..|.+++... |.+.|||++.+...+.|...    +.++.+...|..+++.|.+|+++|++++.   ..++.||+
T Consensus        10 ~~~~~~~l~~~l~~~-~~~~iif~~~~~~~~~l~~~l~~~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGlD   88 (248)
T d1gkub2          10 NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLD   88 (248)
T ss_dssp             SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSC
T ss_pred             CCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCC
T ss_conf             736899999999983-9798999898789999999998734378999999999999982798599996666024651367


Q ss_pred             HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             43206758972689998880225555766654202657753
Q gi|254780130|r  125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV  165 (205)
Q Consensus       125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v  165 (205)
                      ++.+.+.||+|++||    +.|..+|.     .|.|+....
T Consensus        89 ip~~v~~VI~~d~P~----~~~r~gR~-----~R~g~~~~~  120 (248)
T d1gkub2          89 LPERIRFAVFVGCPS----FRVTIEDI-----DSLSPQMVK  120 (248)
T ss_dssp             CTTTCCEEEEESCCE----EEEECSCG-----GGSCHHHHH
T ss_pred             CCCCCCEEEEECCCC----CHHHHHHH-----HCCCCCEEE
T ss_conf             665401899967974----00005456-----316745176


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]