HHSEARCH alignment of GI: 254780130 and SCOP domain: d1jr6a_

Alignment
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.29  E-value=3.4e-08  Score=62.34  Aligned_cols=98  Identities=11%  Similarity=-0.006  Sum_probs=68.0

Q ss_pred             HHCCCCCEEEHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE----E
Q ss_conf             614899711057899999998765304778----23489999997278986999721443233224320675897----2
Q gi|254780130|r   64 EKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF----F  135 (205)
Q Consensus        64 ~~~~~~kviVf~~f~~~l~~l~~~~~~~~~----~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~----~  135 (205)
                      +...+.++||||+-+...+.|...|.....    .. +....+.|++++.+|++++ .+++.|+|. . -..||+    |
T Consensus        31 ~~~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H-~~~~~~~~~~~~~~vlvaT-d~~~~GiD~-~-v~~Vi~~~~~~  106 (138)
T d1jr6a_          31 EVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYY-RGLDVSVIPTNGDVVVVAT-DALMTGFTG-D-FDSVIDCNTSD  106 (138)
T ss_dssp             HHHTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEEC-TTCCSCCCTTSSCEEEEES-SSSCSSSCC-C-BSEEEECSEET
T ss_pred             HHCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHH-CCCHHHHHHHHHCCEEEHH-HHHHHCCCC-C-CCEEEEEEECC
T ss_conf             410899899990958999999999835263203342-3530544323311214106-888702543-3-46177777647


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             689998880225555766654202657753999998388
Q gi|254780130|r  136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN  174 (205)
Q Consensus       136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~  174 (205)
                      ++|++++.|.|.+||-     -| |+.-   +|.+++.+
T Consensus       107 ~~P~~~~~y~qr~GR~-----gR-g~~G---~~~~i~~~  136 (138)
T d1jr6a_         107 GKPQDAVSRTQRRGRT-----GR-GKPG---IYRFVAPG  136 (138)
T ss_dssp             TEECCHHHHHHHHTTB-----CS-SSCE---EEEECCSS
T ss_pred             CCCCCHHHHHHHHCCC-----CC-CCCC---EEEEECCC
T ss_conf             7999999998686230-----48-9982---89997379


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]