HHSEARCH alignment of GI: 254780130 and SCOP domain: d1t5la2

Alignment
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.12  E-value=5.4e-10  Score=72.31  Aligned_cols=102  Identities=14%  Similarity=0.079  Sum_probs=77.8

Q ss_pred             HHHHH-HHHHHHH-CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             34334-9999861-489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   54 EKIKA-LEVIIEK-ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        54 ~Kl~~-l~~ii~~-~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      .+++. |.++.+. ..+.++|||++.....+.+...|.          ++....+|..+++.|.+|+++||+++ .+++.
T Consensus        15 ~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaT-dv~~r   93 (181)
T d1t5la2          15 GQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI-NLLRE   93 (181)
T ss_dssp             THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEES-CCCSS
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHC
T ss_conf             84999999999999629828999610346678888787679404674178638899999999978998889762-47771


Q ss_pred             HHHHHHHCCEEEEECCC-----CCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             32243206758972689-----998880225555766654202657
Q gi|254780130|r  122 GLNLQYGGNILVFFSLW-----WDLEEHQQMIERIGVTRQRQAGFK  162 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~-----~n~~~~~Qa~~Ri~~~r~hR~GQ~  162 (205)
                      ||+... .++||+||+|     +|+..|.|+.||     +.|.|+.
T Consensus        94 GiDip~-v~~VI~~d~p~~~~~~s~~~yi~R~GR-----agR~g~~  133 (181)
T d1t5la2          94 GLDIPE-VSLVAILDADKEGFLRSERSLIQTIGR-----AARNANG  133 (181)
T ss_dssp             SCCCTT-EEEEEETTTTSCSGGGSHHHHHHHHGG-----GTTSTTC
T ss_pred             CCCCCC-CCEEEEECCCCCCCCCCHHHHHHHHHH-----HCCCCCC
T ss_conf             389999-788999569964554358999999876-----2456674


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]