HHSEARCH alignment of GI: 254780130 and SCOP domain: d1tf5a4

Alignment
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=96.94  E-value=0.0017  Score=36.40  Aligned_cols=111  Identities=17%  Similarity=0.127  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861--4899711057899999998765304778--------2348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      ...|++++.+-+.+  ..|+||+|++...+.-+.|...|.....        ...++..+-...-....|.+++ ..||-
T Consensus        16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~Ag~~g~VtIAT-NmAGR   94 (175)
T d1tf5a4          16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIAT-NMAGR   94 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEE-TTSST
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEHH-HHHHC
T ss_conf             99999999999999996599889996819999999999997599712210226899888887513798166445-58870


Q ss_pred             HHH-------HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             322-------43206758972689998880225555766654202657753999
Q gi|254780130|r  122 GLN-------LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY  168 (205)
Q Consensus       122 Gln-------L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~  168 (205)
                      |.+       .+.+.=+||.-.++-|.-...|..||.     -|-|..-....|
T Consensus        95 GtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~-----gRQGdpGs~~~~  143 (175)
T d1tf5a4          95 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRS-----GRQGDPGITQFY  143 (175)
T ss_dssp             TCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTS-----SGGGCCEEEEEE
T ss_pred             CCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHCCH-----HHHCCCCCCEEE
T ss_conf             8875663889857985899840485266788884234-----420787451899


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]