HHSEARCH alignment of GI: 254780130 and SCOP domain: d2bmfa2

Alignment
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=97.09  E-value=0.00042  Score=39.71  Aligned_cols=91  Identities=4%  Similarity=-0.071  Sum_probs=62.3

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHCC----CC--HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE-------
Q ss_conf             8997110578999999987653047----78--2348999999727898699972144323322432067589-------
Q gi|254780130|r   67 NAAPIIVAYHFNSDLARLQKAFPQG----RT--LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV-------  133 (205)
Q Consensus        67 ~~~kviVf~~f~~~l~~l~~~~~~~----~~--~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI-------  133 (205)
                      .+.+++||++...+.+.+...+...    ..  .+..+.....|.++..++++++ .+.+.|+|+. + ..+|       
T Consensus       177 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lvaT-~~~~~G~~~~-~-~~Vi~~~~~~~  253 (305)
T d2bmfa2         177 FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTT-DISEMGANFK-A-ERVIDPRRCMK  253 (305)
T ss_dssp             SCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHGGGGGTSCCSEEEEC-GGGGTTCCCC-C-SEEEECCEEEE
T ss_pred             HCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCHHHHHHH-HHHHHCCCCC-C-CEEEECCCCEE
T ss_conf             0799899963099999999999867998999578384777754310001135556-7887257888-4-08997587414


Q ss_pred             ---EEC----------CCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             ---726----------89998880225555766654202657753
Q gi|254780130|r  134 ---FFS----------LWWDLEEHQQMIERIGVTRQRQAGFKRAV  165 (205)
Q Consensus       134 ---~~~----------~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v  165 (205)
                         +++          .|-|++.+.|..||.     -|.|+....
T Consensus       254 ~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~-----GR~~~~~~~  293 (305)
T d2bmfa2         254 PVILTDGEERVILAGPMPVTHSSAAQRRGRV-----GRNPKNEND  293 (305)
T ss_dssp             EEEECSSSCEEEEEEEEECCHHHHHHHHTTS-----SCSSSCCCE
T ss_pred             EEEECCCCCCEEEECCCCCCHHHHHHHHCCC-----CCCCCCCEE
T ss_conf             6573389876388044569988983241186-----828999269


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]