HHSEARCH alignment of GI: 254780130 and SCOP domain: d2j0sa2

Alignment
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.64  E-value=5.7e-16  Score=105.37  Aligned_cols=124  Identities=13%  Similarity=0.189  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|+++|.++++..++.++|||++.....+.+...+.          +..+.++|..+...|++++.++++++ .+++.|
T Consensus        19 ~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~T-d~~~rG   97 (168)
T d2j0sa2          19 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-DVWARG   97 (168)
T ss_dssp             THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-GGGSSS
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC-CHHCCC
T ss_conf             9999999999984787763999605888788887766304431333112257899999999863884077414-410056


Q ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             22432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK  187 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K  187 (205)
                      +|+.. ++++|+||+|||+..|.|..||.     .|.|++..  ++.+++.+  |...++.+.++
T Consensus        98 iDi~~-v~~VIn~d~P~~~~~yihR~GR~-----gR~g~~G~--~i~~~~~~--d~~~~~~i~~~  152 (168)
T d2j0sa2          98 LDVPQ-VSLIINYDLPNNRELYIHRIGRS-----GRYGRKGV--AINFVKND--DIRILRDIEQY  152 (168)
T ss_dssp             CCCTT-EEEEEESSCCSSHHHHHHHHTTS-----SGGGCCEE--EEEEEEGG--GHHHHHHHHHH
T ss_pred             CCCCC-CCEEEEECCCCCHHHHHHHHCCC-----CCCCCCCE--EEEEECHH--HHHHHHHHHHH
T ss_conf             55357-65689933776787887661044-----52699747--99997789--99999999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]