Query         gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs    122 out of 3331
Neff          7.3 
Searched_HMMs 13730
Date          Sun May 22 06:21:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780130.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1z5za1 c.37.1.19 (A:663-906)  100.0 2.1E-42       0  251.7  13.1  191    2-199    16-222 (244)
  2 d1z3ix1 c.37.1.19 (X:390-735)  100.0 6.7E-41 4.2E-45  243.3  12.2  189    2-196    27-252 (346)
  3 d2fwra1 c.37.1.19 (A:257-456)   99.9 3.7E-24 2.7E-28  150.7   7.2  117   52-175    77-199 (200)
  4 d1wp9a2 c.37.1.19 (A:201-486)   99.9 1.2E-21 9.1E-26  136.7  10.5  121   52-182   141-283 (286)
  5 d1t5ia_ c.37.1.19 (A:) Spliceo  99.8 3.4E-18 2.5E-22  117.7  12.0  128   52-189    11-148 (168)
  6 d1s2ma2 c.37.1.19 (A:252-422)   99.7 5.4E-18 3.9E-22  116.6   9.9  125   53-188    17-151 (171)
  7 d1hv8a2 c.37.1.19 (A:211-365)   99.7 4.8E-17 3.5E-21  111.3  11.0  124   52-187    13-146 (155)
  8 d1fuka_ c.37.1.19 (A:) Initiat  99.7 9.1E-17 6.7E-21  109.8  10.6  122   53-185    12-143 (162)
  9 d2j0sa2 c.37.1.19 (A:244-411)   99.6 5.7E-16 4.2E-20  105.4  10.0  124   53-187    19-152 (168)
 10 d2rb4a1 c.37.1.19 (A:307-474)   99.6 2.7E-15 1.9E-19  101.7   9.6  124   53-187    17-156 (168)
 11 d1oywa3 c.37.1.19 (A:207-406)   99.5 1.6E-14 1.2E-18   97.3   9.4  112   53-173    15-136 (200)
 12 d1gkub2 c.37.1.16 (B:251-498)   99.2 4.1E-12   3E-16   84.0   2.1  104   52-165    10-120 (248)
 13 d1t5la2 c.37.1.19 (A:415-595)   99.1 5.4E-10 3.9E-14   72.3  11.7  102   54-162    15-133 (181)
 14 d1c4oa2 c.37.1.19 (A:410-583)   99.0 6.6E-10 4.8E-14   71.8   9.2   99   58-163    20-134 (174)
 15 d2p6ra4 c.37.1.19 (A:203-403)   98.9 2.2E-09 1.6E-13   69.0   6.6   77   91-174   103-186 (201)
 16 d1jr6a_ c.37.1.14 (A:) HCV hel  98.3 3.4E-08 2.5E-12   62.3  -0.4   98   64-174    31-136 (138)
 17 d1gm5a4 c.37.1.19 (A:550-755)   98.2 1.3E-07 9.3E-12   59.2   0.6   72   89-167    71-143 (206)
 18 d1a1va2 c.37.1.14 (A:326-624)   98.1 3.7E-07 2.7E-11   56.6   0.8  106   67-182    35-162 (299)
 19 d2eyqa5 c.37.1.19 (A:779-989)   97.2 0.00032 2.3E-08   40.4   5.3   92   67-165    30-134 (211)
 20 d2bmfa2 c.37.1.14 (A:178-482)   97.1 0.00042 3.1E-08   39.7   5.4   91   67-165   177-293 (305)
 21 d1tf5a4 c.37.1.19 (A:396-570)   96.9  0.0017 1.2E-07   36.4   7.4  111   52-168    16-143 (175)
 22 d1yksa2 c.37.1.14 (A:325-623)   95.5  0.0094 6.9E-07   32.2   4.9   93   61-162    30-147 (299)
 23 d1nkta4 c.37.1.19 (A:397-615)   93.4     0.2 1.4E-05   25.0   8.4  138   47-197    11-209 (219)
 24 d2ifta1 c.66.1.46 (A:11-193) P  31.2     9.7 0.00071   15.6   1.6   22  131-152   117-138 (183)
 25 d1jbea_ c.23.1.1 (A:) CheY pro  24.5      18  0.0013   14.0   6.4   49  106-160    77-127 (128)
 26 d2fpoa1 c.66.1.46 (A:10-192) M  24.3      15  0.0011   14.5   1.6   22  131-152   113-134 (183)

No 1  
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00  E-value=2.1e-42  Score=251.66  Aligned_cols=191  Identities=18%  Similarity=0.225  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHHCCCCEE--HHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEHHHH
Q ss_conf             35899999999973578320--999999999998860770003445654205723433499998614--89971105789
Q gi|254780130|r    2 KQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF   77 (205)
Q Consensus         2 k~Y~~l~~~~~~~~~~~~i~--a~~~~~~~~kL~Ql~~g~~~~d~~~~~~~~~~~Kl~~l~~ii~~~--~~~kviVf~~f   77 (205)
                      +.|+++.++....++.....  ..+.++.+++|+|+|+||...++.. .....++|++++.+++.+.  +|+||||||+|
T Consensus        16 ~~Y~~~~~~~~~~~~~~~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~-~~~~~S~K~~~l~~~l~~~~~~g~kviIFs~~   94 (244)
T d1z5za1          16 AMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQF   94 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC-CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             99999999999987611240027899999999876522875212333-10212068999999887641466625999601


Q ss_pred             HHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
Q ss_conf             99999987653-----------0477823489999997278-98699972144323322432067589726899988802
Q gi|254780130|r   78 NSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ  145 (205)
Q Consensus        78 ~~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~~~-~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~  145 (205)
                      ...++.|...+           .|+.+.+.|+.+++.|+++ +.+|+++++++||+|+|||. |+++||+|++|||..+.
T Consensus        95 ~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~-a~~vi~~~~~wn~~~~~  173 (244)
T d1z5za1          95 VDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPAVED  173 (244)
T ss_dssp             HHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTT-CSEEEECSCCSCTTTC-
T ss_pred             EEHHHHHHHHHHHHCCCEEEEEECCCCHHCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHH
T ss_conf             00677899998761351289996664200011045544301210010143112356621120-01432047124467776


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             255557666542026577539999983889589999999999999999999998
Q gi|254780130|r  146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK  199 (205)
Q Consensus       146 Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~~~  199 (205)
                      ||++|+     ||+||+++|+||+|+++||+|+.|++++..|..+++.+++..+
T Consensus       174 Qa~~R~-----~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~K~~~~~~~~~~~~  222 (244)
T d1z5za1         174 QATDRV-----YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD  222 (244)
T ss_dssp             ------------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTT
T ss_pred             HHCCEE-----EECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             542501-----5649997259999861899999999999999999999871873


No 2  
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00  E-value=6.7e-41  Score=243.29  Aligned_cols=189  Identities=20%  Similarity=0.322  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHHHC-CCCEEHHHHHHHHHHHHHHCCCCHHCC-----------CC----------CCCCCCCHHHHHHH
Q ss_conf             358999999999735-783209999999999988607700034-----------45----------65420572343349
Q gi|254780130|r    2 KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-----------EE----------KHWKEVHDEKIKAL   59 (205)
Q Consensus         2 k~Y~~l~~~~~~~~~-~~~i~a~~~~~~~~kL~Ql~~g~~~~d-----------~~----------~~~~~~~~~Kl~~l   59 (205)
                      +.|+++.+....... .......+.+..+++|+|+||||....           ..          .......++|+..|
T Consensus        27 ~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L  106 (346)
T d1z3ix1          27 ELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL  106 (346)
T ss_dssp             HHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf             99999999899998654487168999999999999579988611110221123200331233410000140017899999


Q ss_pred             HHHHHH---CCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCC--CCEEEECHHHHHHHHH
Q ss_conf             999861---48997110578999999987653----------04778234899999972789--8699972144323322
Q gi|254780130|r   60 EVIIEK---ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLN  124 (205)
Q Consensus        60 ~~ii~~---~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~--~~Vll~~~~a~g~Gln  124 (205)
                      .+++..   .+|+|||||++|...++.|...+          .++.+..+|..+++.|++++  ..|||++++|||+|||
T Consensus       107 ~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~Gln  186 (346)
T d1z3ix1         107 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN  186 (346)
T ss_dssp             HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred             HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCC
T ss_conf             99999988751895168863014567999997630024110111002788999998651023433025403314443356


Q ss_pred             HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             432067589726899988802255557666542026577539999983889589999999999999999999
Q gi|254780130|r  125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN  196 (205)
Q Consensus       125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~  196 (205)
                      || +|+++|+||++|||..+.||++|+     ||+||+++|+||+|+++||||++|++++..|..+++.+++
T Consensus       187 L~-~a~~vi~~d~~wnp~~~~Qa~~R~-----~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~  252 (346)
T d1z3ix1         187 LI-GANRLVMFDPDWNPANDEQAMARV-----WRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD  252 (346)
T ss_dssp             CT-TEEEEEECSCCSSHHHHHHHHTTS-----SSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCS
T ss_pred             CC-CCEEEEEECCCCCCCHHHHHHHCC-----CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             56-430799945788615586763334-----0348998438999873898999999999999999998758


No 3  
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.89  E-value=3.7e-24  Score=150.68  Aligned_cols=117  Identities=21%  Similarity=0.305  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf             72343349999861489971105789999999876530-----4778234899999972789869997214432332243
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ  126 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-----~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~  126 (205)
                      .+.|+++|.+++++.++.++|||+++...++.|.+.|.     +..+.++|+.+++.|++++.+||++ +.++|+|+||+
T Consensus        77 ~~~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~-~~~~~~Gidl~  155 (200)
T d2fwra1          77 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVS-SQVLDEGIDVP  155 (200)
T ss_dssp             CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBC-SSCCCSSSCSC
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCEEEEEE-CCHHHCCCCCC
T ss_conf             48899999999996779807999475999999876338552557999999999998863487035430-21021025799


Q ss_pred             HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCEEEEEEEECCC
Q ss_conf             206758972689998880225555766654202657-7539999983889
Q gi|254780130|r  127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNT  175 (205)
Q Consensus       127 ~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~-~~v~v~~l~~~~t  175 (205)
                       .++++|+++++|||..+.|++||+     ||+||. +.+.+|+|+++||
T Consensus       156 -~~~~vi~~~~~~s~~~~~Q~iGR~-----~R~~~~k~~~~i~~~v~~~T  199 (200)
T d2fwra1         156 -DANVGVIMSGSGSAREYIQRLGRI-----LRPSKGKKEAVLYELISRGT  199 (200)
T ss_dssp             -CBSEEEEECCSSCCHHHHHHHHHS-----BCCCTTTCCEEEEEEEECSC
T ss_pred             -CCCEEEEECCCCCHHHHHHHHHHC-----CCCCCCCCEEEEEEEECCCC
T ss_conf             -888899967997999999998744-----87999986799999952999


No 4  
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.86  E-value=1.2e-21  Score=136.69  Aligned_cols=121  Identities=21%  Similarity=0.280  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHH----HCCCCCEEEHHHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHCCCC
Q ss_conf             7234334999986----14899711057899999998765304------------------7782348999999727898
Q gi|254780130|r   52 HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQ------------------GRTLDKDPCTIQEWNEGKI  109 (205)
Q Consensus        52 ~~~Kl~~l~~ii~----~~~~~kviVf~~f~~~l~~l~~~~~~------------------~~~~~~r~~~i~~f~~~~~  109 (205)
                      .++|++.+.+++.    ..++.++||||++....+.+...|..                  +.+...|...++.|++|++
T Consensus       141 ~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~  220 (286)
T d1wp9a2         141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF  220 (286)
T ss_dssp             SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCC
T ss_conf             88289999999999997189984899967188679999999976996488605664334201022889999999876998


Q ss_pred             CEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH
Q ss_conf             6999721443233224320675897268999888022555576665420265775399999838895899999
Q gi|254780130|r  110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ  182 (205)
Q Consensus       110 ~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~  182 (205)
                      +||+++ .++|+|||++ .|++||+||+||||..+.|++||        .|+.+++.++.|+++||+||..|.
T Consensus       221 ~vLv~T-~~~~~Gld~~-~~~~Vi~~d~~~~~~~~~Qr~GR--------~gR~~~~~~~~l~~~~~~ee~~~~  283 (286)
T d1wp9a2         221 NVLVAT-SVGEEGLDVP-EVDLVVFYEPVPSAIRSIQRRGR--------TGRHMPGRVIILMAKGTRDEAYYW  283 (286)
T ss_dssp             SEEEEC-GGGGGGGGST-TCCEEEESSCCHHHHHHHHHHTT--------SCSCCCSEEEEEEETTSHHHHHHH
T ss_pred             CEEEEC-CCEECCCCCC-CCCEEEEECCCCCHHHHHHHHHH--------CCCCCCCEEEEEEECCCHHHHHHH
T ss_conf             299971-4402036688-89989995899898999999985--------787999889999838988999886


No 5  
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.76  E-value=3.4e-18  Score=117.67  Aligned_cols=128  Identities=14%  Similarity=0.198  Sum_probs=105.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      .+.|+++|.++++..++.++||||+++...+.|.+.|.          ++.+...|...++.|++|+.+||+++ .+++.
T Consensus        11 ~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T-~~~~~   89 (168)
T d1t5ia_          11 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGR   89 (168)
T ss_dssp             GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-SCCST
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC-CCCCC
T ss_conf             59999999999983899819999803441101333430124443211122210222211221112221144123-30110


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             32243206758972689998880225555766654202657753999998388958999999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST  189 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~  189 (205)
                      |+|++. ++++|+|++|||+..|.|+.||.     +|.|++..|  +.|++. .-|..++..+.++..
T Consensus        90 Gid~~~-~~~vi~~~~p~~~~~yiqr~GR~-----gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~~~  148 (168)
T d1t5ia_          90 GMDIER-VNIAFNYDMPEDSDTYLHRVARA-----GRFGTKGLA--ITFVSD-ENDAKILNDVQDRFE  148 (168)
T ss_dssp             TCCGGG-CSEEEESSCCSSHHHHHHHHHHH-----TGGGCCCEE--EEEECS-HHHHHHHHHHHHHHC
T ss_pred             HHHCCC-CHHHHHHHCCCCHHHHHHHHHHC-----CCCCCCCEE--EEEECC-HHHHHHHHHHHHHHC
T ss_conf             012044-13443221132214576542231-----528985189--999884-679999999999976


No 6  
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.74  E-value=5.4e-18  Score=116.57  Aligned_cols=125  Identities=18%  Similarity=0.241  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|++.|.++++..++.++|||+++....+.+...|.          ++....+|..+...|.++..++++++ .+++.|
T Consensus        17 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~T-d~~~~G   95 (171)
T d1s2ma2          17 RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-DLLTRG   95 (171)
T ss_dssp             GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-SCSSSS
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH-HHHHHC
T ss_conf             9999999999984898765999722413567677650133443334333211456655321136863110120-176541


Q ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             224320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS  188 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~  188 (205)
                      +|++. ++++|+|++|||+..|.|+.||.     +|.|++..  ++.|++++  |...++.+.++.
T Consensus        96 id~~~-v~~VI~~d~p~~~~~y~qr~GR~-----gR~g~~g~--~i~~v~~~--e~~~~~~i~~~l  151 (171)
T d1s2ma2          96 IDIQA-VNVVINFDFPKTAETYLHRIGRS-----GRFGHLGL--AINLINWN--DRFNLYKIEQEL  151 (171)
T ss_dssp             CCCTT-EEEEEESSCCSSHHHHHHHHCBS-----SCTTCCEE--EEEEECGG--GHHHHHHHHHHH
T ss_pred             CCCCE-EEEEEECCCCCHHHHHHHHHHHC-----CCCCCCCE--EEEEECHH--HHHHHHHHHHHH
T ss_conf             04662-48999648760277787775531-----41799617--99985789--999999999997


No 7  
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.71  E-value=4.8e-17  Score=111.32  Aligned_cols=124  Identities=18%  Similarity=0.201  Sum_probs=100.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      ...|+++|.++++.. +.++|||++...+.+.|...|.          ++....+|..++++|.+++.++++++ .+++.
T Consensus        13 ~~~K~~~L~~ll~~~-~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T-~~~~~   90 (155)
T d1hv8a2          13 ENERFEALCRLLKNK-EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-DVMSR   90 (155)
T ss_dssp             GGGHHHHHHHHHCST-TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-TTHHH
T ss_pred             HHHHHHHHHHHHCCC-CCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEH-HHHHH
T ss_conf             399999999997269-9989999794489988876523343222233331001134566655412111255303-67765


Q ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             322432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r  122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK  187 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K  187 (205)
                      |+|++. ++++|+|++|||+..|.|+.||.     .|.|++..+  +.++.+.  |...++.+.++
T Consensus        91 Gid~~~-v~~Vi~~d~p~~~~~y~qr~GR~-----gR~g~~g~~--i~~~~~~--d~~~~~~i~~~  146 (155)
T d1hv8a2          91 GIDVND-LNCVINYHLPQNPESYMHRIGRT-----GRAGKKGKA--ISIINRR--EYKKLRYIERA  146 (155)
T ss_dssp             HCCCSC-CSEEEESSCCSCHHHHHHHSTTT-----CCSSSCCEE--EEEECTT--SHHHHHHHHHH
T ss_pred             HHHHCC-CCEEEEECCCCCHHHHHHHHHHC-----CCCCCCCEE--EEEECHH--HHHHHHHHHHH
T ss_conf             432212-76799964999999999887763-----747997369--9998668--99999999999


No 8  
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.69  E-value=9.1e-17  Score=109.77  Aligned_cols=122  Identities=13%  Similarity=0.209  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      +.|++.|.++++..++.++||||+++...+.+.+.+.          ++....+|..+.+.|++++.++|+++ .+++.|
T Consensus        12 e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~T-dv~~rG   90 (162)
T d1fuka_          12 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-DLLARG   90 (162)
T ss_dssp             GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-GGGTTT
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECC-CCCCCC
T ss_conf             7899999999984898858999988706999998886549559995167752367789998764036456515-623446


Q ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf             224320675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR  185 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~  185 (205)
                      +|++. +++||+||+|||++.|.|+.||.     .|.||+..  .+.+++.+  |......+.
T Consensus        91 iDi~~-v~~VI~~d~P~~~~~yihR~GR~-----gR~g~~g~--~i~~~~~~--d~~~~~~i~  143 (162)
T d1fuka_          91 IDVQQ-VSLVINYDLPANKENYIHRIGRG-----GRFGRKGV--AINFVTNE--DVGAMRELE  143 (162)
T ss_dssp             CCCCS-CSEEEESSCCSSGGGGGGSSCSC-----C-----CE--EEEEEETT--THHHHHHHH
T ss_pred             CCCCC-CEEEEEECCCHHHHHHHHHCCCC-----CCCCCCCE--EEEECCHH--HHHHHHHHH
T ss_conf             55777-50899934514677887650144-----54798647--99981799--999999999


No 9  
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.64  E-value=5.7e-16  Score=105.37  Aligned_cols=124  Identities=13%  Similarity=0.189  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|+++|.++++..++.++|||++.....+.+...+.          +..+.++|..+...|++++.++++++ .+++.|
T Consensus        19 ~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~T-d~~~rG   97 (168)
T d2j0sa2          19 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-DVWARG   97 (168)
T ss_dssp             THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-GGGSSS
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC-CHHCCC
T ss_conf             9999999999984787763999605888788887766304431333112257899999999863884077414-410056


Q ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             22432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK  187 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K  187 (205)
                      +|+.. ++++|+||+|||+..|.|..||.     .|.|++..  ++.+++.+  |...++.+.++
T Consensus        98 iDi~~-v~~VIn~d~P~~~~~yihR~GR~-----gR~g~~G~--~i~~~~~~--d~~~~~~i~~~  152 (168)
T d2j0sa2          98 LDVPQ-VSLIINYDLPNNRELYIHRIGRS-----GRYGRKGV--AINFVKND--DIRILRDIEQY  152 (168)
T ss_dssp             CCCTT-EEEEEESSCCSSHHHHHHHHTTS-----SGGGCCEE--EEEEEEGG--GHHHHHHHHHH
T ss_pred             CCCCC-CCEEEEECCCCCHHHHHHHHCCC-----CCCCCCCE--EEEEECHH--HHHHHHHHHHH
T ss_conf             55357-65689933776787887661044-----52699747--99997789--99999999999


No 10 
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.59  E-value=2.7e-15  Score=101.67  Aligned_cols=124  Identities=20%  Similarity=0.290  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|++.|.++++.....+++||+++....+.|...+.          +......|..+++.|.+++.++++++ .+++.|
T Consensus        17 ~~K~~~L~~ll~~~~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~ilv~T-d~~~~G   95 (168)
T d2rb4a1          17 KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-NVCARG   95 (168)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-CSCCTT
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEECH-HHHHHH
T ss_conf             8999999999986798857997188899999999998647762102331156777877633137960034112-454321


Q ss_pred             HHHHHHCCEEEEECCCCC------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             224320675897268999------88802255557666542026577539999983889589999999999
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWD------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK  187 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n------~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K  187 (205)
                      +|++. .++||+||+||+      +..|.|+.||.     .|.|++.  .++.|++.+  |...+..+.++
T Consensus        96 id~~~-v~~Vi~yd~P~~~~~~~~~~~yihR~GR~-----gR~g~~g--~~i~~~~~~--d~~~l~~i~~~  156 (168)
T d2rb4a1          96 IDVKQ-VTIVVNFDLPVKQGEEPDYETYLHRIGRT-----GRFGKKG--LAFNMIEVD--ELPSLMKIQDH  156 (168)
T ss_dssp             TCCTT-EEEEEESSCCC--CCSCCHHHHHHHHCBC---------CCE--EEEEEECGG--GHHHHHHHHHH
T ss_pred             HCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHC-----CCCCCCE--EEEEEECHH--HHHHHHHHHHH
T ss_conf             10466-42798525898644558999998886433-----6689944--899997689--99999999999


No 11 
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.54  E-value=1.6e-14  Score=97.32  Aligned_cols=112  Identities=12%  Similarity=0.179  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf             234334999986148997110578999999987653----------0477823489999997278986999721443233
Q gi|254780130|r   53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG  122 (205)
Q Consensus        53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G  122 (205)
                      ..|++.|..++....+.++|||++.....+.|...+          .++...+.|..+.+.|++++.++++++ .++|.|
T Consensus        15 ~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaT-d~~~~G   93 (200)
T d1oywa3          15 FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-VAFGMG   93 (200)
T ss_dssp             SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-TTSCTT
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CHHHHC
T ss_conf             7689999999985699988999822311677644324478535775388717778999988741343078740-234531


Q ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             224320675897268999888022555576665420265775399999838
Q gi|254780130|r  123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ  173 (205)
Q Consensus       123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~  173 (205)
                      +|+.. .++||+|++|+|+..|.|..||.     -|.|+...+.  .|++.
T Consensus        94 iD~p~-v~~VI~~~~P~~~~~y~qr~GR~-----gR~g~~g~ai--~~~~~  136 (200)
T d1oywa3          94 INKPN-VRFVVHFDIPRNIESYYQETGRA-----GRDGLPAEAM--LFYDP  136 (200)
T ss_dssp             TCCTT-CCEEEESSCCSSHHHHHHHHTTS-----CTTSSCEEEE--EEECH
T ss_pred             CCCCC-CCEEEECCCCCCHHHHHHHHHHH-----HCCCCCCEEE--EECCH
T ss_conf             68878-88999877751168898875453-----1377772587--75178


No 12 
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.15  E-value=4.1e-12  Score=84.04  Aligned_cols=104  Identities=21%  Similarity=0.226  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHCCCCCEEEECH---HHHHHHHH
Q ss_conf             723433499998614899711057899999998765----30477823489999997278986999721---44323322
Q gi|254780130|r   52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTIQEWNEGKIPLLFAHP---ASCGHGLN  124 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~----~~~~~~~~~r~~~i~~f~~~~~~Vll~~~---~a~g~Gln  124 (205)
                      ++.|+..|.+++... |.+.|||++.+...+.|...    +.++.+...|..+++.|.+|+++|++++.   ..++.||+
T Consensus        10 ~~~~~~~l~~~l~~~-~~~~iif~~~~~~~~~l~~~l~~~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGlD   88 (248)
T d1gkub2          10 NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLD   88 (248)
T ss_dssp             SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSC
T ss_pred             CCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCC
T ss_conf             736899999999983-9798999898789999999998734378999999999999982798599996666024651367


Q ss_pred             HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             43206758972689998880225555766654202657753
Q gi|254780130|r  125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV  165 (205)
Q Consensus       125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v  165 (205)
                      ++.+.+.||+|++||    +.|..+|.     .|.|+....
T Consensus        89 ip~~v~~VI~~d~P~----~~~r~gR~-----~R~g~~~~~  120 (248)
T d1gkub2          89 LPERIRFAVFVGCPS----FRVTIEDI-----DSLSPQMVK  120 (248)
T ss_dssp             CTTTCCEEEEESCCE----EEEECSCG-----GGSCHHHHH
T ss_pred             CCCCCCEEEEECCCC----CHHHHHHH-----HCCCCCEEE
T ss_conf             665401899967974----00005456-----316745176


No 13 
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.12  E-value=5.4e-10  Score=72.31  Aligned_cols=102  Identities=14%  Similarity=0.079  Sum_probs=77.8

Q ss_pred             HHHHH-HHHHHHH-CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             34334-9999861-489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r   54 EKIKA-LEVIIEK-ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        54 ~Kl~~-l~~ii~~-~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      .+++. |.++.+. ..+.++|||++.....+.+...|.          ++....+|..+++.|.+|+++||+++ .+++.
T Consensus        15 ~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaT-dv~~r   93 (181)
T d1t5la2          15 GQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI-NLLRE   93 (181)
T ss_dssp             THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEES-CCCSS
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHC
T ss_conf             84999999999999629828999610346678888787679404674178638899999999978998889762-47771


Q ss_pred             HHHHHHHCCEEEEECCC-----CCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             32243206758972689-----998880225555766654202657
Q gi|254780130|r  122 GLNLQYGGNILVFFSLW-----WDLEEHQQMIERIGVTRQRQAGFK  162 (205)
Q Consensus       122 GlnL~~a~~~vI~~~~~-----~n~~~~~Qa~~Ri~~~r~hR~GQ~  162 (205)
                      ||+... .++||+||+|     +|+..|.|+.||     +.|.|+.
T Consensus        94 GiDip~-v~~VI~~d~p~~~~~~s~~~yi~R~GR-----agR~g~~  133 (181)
T d1t5la2          94 GLDIPE-VSLVAILDADKEGFLRSERSLIQTIGR-----AARNANG  133 (181)
T ss_dssp             SCCCTT-EEEEEETTTTSCSGGGSHHHHHHHHGG-----GTTSTTC
T ss_pred             CCCCCC-CCEEEEECCCCCCCCCCHHHHHHHHHH-----HCCCCCC
T ss_conf             389999-788999569964554358999999876-----2456674


No 14 
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.04  E-value=6.6e-10  Score=71.81  Aligned_cols=99  Identities=15%  Similarity=0.070  Sum_probs=77.3

Q ss_pred             HHHHHHHH-CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf             49999861-489971105789999999876530----------4778234899999972789869997214432332243
Q gi|254780130|r   58 ALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ  126 (205)
Q Consensus        58 ~l~~ii~~-~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~  126 (205)
                      .+.++.+. ..|+++||||.-....+.|...|.          ++....+|..+++.|.+|+++||+++ .++++|+|..
T Consensus        20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT-~v~~~GiDip   98 (174)
T d1c4oa2          20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-NLLREGLDIP   98 (174)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-CCCCTTCCCT
T ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEE-EEEEEECCCC
T ss_conf             999999998659838999823037999999998659725898615541889999999977986999963-5642113677


Q ss_pred             HHCCEEEEECCCC-----CHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             2067589726899-----988802255557666542026577
Q gi|254780130|r  127 YGGNILVFFSLWW-----DLEEHQQMIERIGVTRQRQAGFKR  163 (205)
Q Consensus       127 ~a~~~vI~~~~~~-----n~~~~~Qa~~Ri~~~r~hR~GQ~~  163 (205)
                      . .+++|+|++|-     |+..|.|..||.     -|-|.-.
T Consensus        99 ~-V~~Vi~~~~~~~~~~~~~~~~iq~~GR~-----gR~~~g~  134 (174)
T d1c4oa2          99 E-VSLVAILDADKEGFLRSERSLIQTIGRA-----ARNARGE  134 (174)
T ss_dssp             T-EEEEEETTTTSCSGGGSHHHHHHHHGGG-----TTSTTCE
T ss_pred             C-CCEEEEECCCCCCCCCHHHHHHHHHHHH-----HHCCCCE
T ss_conf             7-7389980365445530167799886144-----3047870


No 15 
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.86  E-value=2.2e-09  Score=68.98  Aligned_cols=77  Identities=19%  Similarity=0.323  Sum_probs=60.0

Q ss_pred             CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-------ECCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             77823489999997278986999721443233224320675897-------26899988802255557666542026577
Q gi|254780130|r   91 GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-------FSLWWDLEEHQQMIERIGVTRQRQAGFKR  163 (205)
Q Consensus        91 ~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-------~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~  163 (205)
                      +.+...|..+.+.|+++.++|++++. +.+.|+|+. +.+++|.       ++.++++..+.|..||.     -|.|+..
T Consensus       103 ~l~~~~r~~ie~~f~~g~i~vlvaT~-~l~~Gin~p-~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRA-----GR~g~~~  175 (201)
T d2p6ra4         103 GLLNGQRRVVEDAFRRGNIKVVVATP-TLAAGVNLP-ARRVIVRSLYRFDGYSKRIKVSEYKQMAGRA-----GRPGMDE  175 (201)
T ss_dssp             TSCHHHHHHHHHHHHTTSCCEEEECS-TTTSSSCCC-BSEEEECCSEEESSSEEECCHHHHHHHHTTB-----SCTTTCS
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECH-HHHHHCCCC-CCEEEEECCEECCCCCCCCCHHHHHHHHCCC-----CCCCCCC
T ss_conf             76256689999998679814997041-887523799-7469995142046874779999999875446-----8999997


Q ss_pred             CEEEEEEEECC
Q ss_conf             53999998388
Q gi|254780130|r  164 AVFVYYLIAQN  174 (205)
Q Consensus       164 ~v~v~~l~~~~  174 (205)
                      .-.++.+..+.
T Consensus       176 ~G~~~l~~~~~  186 (201)
T d2p6ra4         176 RGEAIIIVGKR  186 (201)
T ss_dssp             CEEEEEECCGG
T ss_pred             EEEEEEEECCC
T ss_conf             25999996898


No 16 
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.29  E-value=3.4e-08  Score=62.34  Aligned_cols=98  Identities=11%  Similarity=-0.006  Sum_probs=68.0

Q ss_pred             HHCCCCCEEEHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE----E
Q ss_conf             614899711057899999998765304778----23489999997278986999721443233224320675897----2
Q gi|254780130|r   64 EKANAAPIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF----F  135 (205)
Q Consensus        64 ~~~~~~kviVf~~f~~~l~~l~~~~~~~~~----~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~----~  135 (205)
                      +...+.++||||+-+...+.|...|.....    .. +....+.|++++.+|++++ .+++.|+|. . -..||+    |
T Consensus        31 ~~~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H-~~~~~~~~~~~~~~vlvaT-d~~~~GiD~-~-v~~Vi~~~~~~  106 (138)
T d1jr6a_          31 EVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYY-RGLDVSVIPTNGDVVVVAT-DALMTGFTG-D-FDSVIDCNTSD  106 (138)
T ss_dssp             HHHTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEEC-TTCCSCCCTTSSCEEEEES-SSSCSSSCC-C-BSEEEECSEET
T ss_pred             HHCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHH-CCCHHHHHHHHHCCEEEHH-HHHHHCCCC-C-CCEEEEEEECC
T ss_conf             410899899990958999999999835263203342-3530544323311214106-888702543-3-46177777647


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             689998880225555766654202657753999998388
Q gi|254780130|r  136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN  174 (205)
Q Consensus       136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~  174 (205)
                      ++|++++.|.|.+||-     -| |+.-   +|.+++.+
T Consensus       107 ~~P~~~~~y~qr~GR~-----gR-g~~G---~~~~i~~~  136 (138)
T d1jr6a_         107 GKPQDAVSRTQRRGRT-----GR-GKPG---IYRFVAPG  136 (138)
T ss_dssp             TEECCHHHHHHHHTTB-----CS-SSCE---EEEECCSS
T ss_pred             CCCCCHHHHHHHHCCC-----CC-CCCC---EEEEECCC
T ss_conf             7999999998686230-----48-9982---89997379


No 17 
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.18  E-value=1.3e-07  Score=59.18  Aligned_cols=72  Identities=15%  Similarity=0.291  Sum_probs=56.9

Q ss_pred             HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCE-EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             0477823489999997278986999721443233224320675-897268999888022555576665420265775399
Q gi|254780130|r   89 PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI-LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV  167 (205)
Q Consensus        89 ~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~-vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v  167 (205)
                      .+..+.++++.++..|.+++++||++| ....+|||... +++ +|+..+.|..+.+.|-.||+     -|-|++.-|+.
T Consensus        71 HG~m~~~eke~~m~~F~~g~~~iLVaT-tViE~GIDip~-a~~iii~~a~~fglsqlhQlrGRv-----GR~~~~~~~~l  143 (206)
T d1gm5a4          71 HGRLSQEEKDRVMLEFAEGRYDILVST-TVIEVGIDVPR-ANVMVIENPERFGLAQLHQLRGRV-----GRGGQEAYCFL  143 (206)
T ss_dssp             CSSSCCSCSHHHHHHHTTTSSSBCCCS-SCCCSCSCCTT-CCEEEBCSCSSSCTTHHHHHHHTS-----CCSSTTCEEEC
T ss_pred             EECCCHHHHHHHHHHHHCCCEEEEEEE-HHHHCCCCCCC-CCEEEEECCCCCCHHHHHHHHHHE-----EECCCCCEEEE
T ss_conf             603659999999999977987899970-24310455267-848999804886377887652021-----21212540576


No 18 
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.05  E-value=3.7e-07  Score=56.62  Aligned_cols=106  Identities=11%  Similarity=0.075  Sum_probs=73.5

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHC----------CCCHHH----------HHHHHHHHHCCCCCEEEECHH--HHHHHHH
Q ss_conf             899711057899999998765304----------778234----------899999972789869997214--4323322
Q gi|254780130|r   67 NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK----------DPCTIQEWNEGKIPLLFAHPA--SCGHGLN  124 (205)
Q Consensus        67 ~~~kviVf~~f~~~l~~l~~~~~~----------~~~~~~----------r~~~i~~f~~~~~~Vll~~~~--a~g~Gln  124 (205)
                      .+.++|||++.+...+.|...|..          +...+.          ...+++.|..++.++++++..  .+..|++
T Consensus        35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD  114 (299)
T d1a1va2          35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS  114 (299)
T ss_dssp             HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCCCCC
T ss_conf             69989998796899999999997779878997589407778731205777899999886599838999862010478788


Q ss_pred             HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH
Q ss_conf             4320675897268999888022555576665420265775399999838895899999
Q gi|254780130|r  125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ  182 (205)
Q Consensus       125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~  182 (205)
                      +. ...++|.++.|.|++.|.|++||.     -| |..-   +|+++.-+|-++.+++
T Consensus       115 id-~V~~VI~~d~P~SvesyIQRiGRT-----GR-Gr~G---~~~~l~~~t~p~~~l~  162 (299)
T d1a1va2         115 LD-PTFTIETTTLPQDAVSRTQRRGRT-----GR-GKPG---IYRFVAPGERPSGMFD  162 (299)
T ss_dssp             CS-SSCEEEEEEEECBHHHHHHHHTTB-----CS-SSCE---EEEESCSCCBCSCBCC
T ss_pred             CC-CCEEEEECCCCCCHHHHHHHCCCC-----CC-CCCC---EEEEEECCCCHHHHHH
T ss_conf             78-516999689998989987621443-----79-9981---6989714788788999


No 19 
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=97.15  E-value=0.00032  Score=40.40  Aligned_cols=92  Identities=12%  Similarity=0.264  Sum_probs=62.6

Q ss_pred             CCCCEEEHHHHHHHH----HHHHHHHHC--------CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf             899711057899999----998765304--------77823489999997278986999721443233224320675897
Q gi|254780130|r   67 NAAPIIVAYHFNSDL----ARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF  134 (205)
Q Consensus        67 ~~~kviVf~~f~~~l----~~l~~~~~~--------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~  134 (205)
                      .|..|.+.|+-.++.    +.+.+.|++        -...++.+.++.+|.+++++||++|+ ...+|++... |+++|.
T Consensus        30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-vIEvGiDvpn-A~~iiI  107 (211)
T d2eyqa5          30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIETGIDIPT-ANTIII  107 (211)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-TTGGGSCCTT-EEEEEE
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEH-HHHHCCCCCC-CCEEEE
T ss_conf             69959999717521266888888747733799997226888899999999829862688755-3440468998-769987


Q ss_pred             ECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             268-9998880225555766654202657753
Q gi|254780130|r  135 FSL-WWDLEEHQQMIERIGVTRQRQAGFKRAV  165 (205)
Q Consensus       135 ~~~-~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v  165 (205)
                      .+. .|-.+..-|-.||+.     |-+...-|
T Consensus       108 ~~a~rfGLaQLhQLRGRVG-----R~~~~s~c  134 (211)
T d2eyqa5         108 ERADHFGLAQLHQLRGRVG-----RSHHQAYA  134 (211)
T ss_dssp             TTTTSSCHHHHHHHHTTCC-----BTTBCEEE
T ss_pred             ECCHHCCCCCCCCCCCEEE-----ECCCCCEE
T ss_conf             1300033112223023355-----36766548


No 20 
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=97.09  E-value=0.00042  Score=39.71  Aligned_cols=91  Identities=4%  Similarity=-0.071  Sum_probs=62.3

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHCC----CC--HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE-------
Q ss_conf             8997110578999999987653047----78--2348999999727898699972144323322432067589-------
Q gi|254780130|r   67 NAAPIIVAYHFNSDLARLQKAFPQG----RT--LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV-------  133 (205)
Q Consensus        67 ~~~kviVf~~f~~~l~~l~~~~~~~----~~--~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI-------  133 (205)
                      .+.+++||++...+.+.+...+...    ..  .+..+.....|.++..++++++ .+.+.|+|+. + ..+|       
T Consensus       177 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lvaT-~~~~~G~~~~-~-~~Vi~~~~~~~  253 (305)
T d2bmfa2         177 FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTT-DISEMGANFK-A-ERVIDPRRCMK  253 (305)
T ss_dssp             SCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHGGGGGTSCCSEEEEC-GGGGTTCCCC-C-SEEEECCEEEE
T ss_pred             HCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCHHHHHHH-HHHHHCCCCC-C-CEEEECCCCEE
T ss_conf             0799899963099999999999867998999578384777754310001135556-7887257888-4-08997587414


Q ss_pred             ---EEC----------CCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             ---726----------89998880225555766654202657753
Q gi|254780130|r  134 ---FFS----------LWWDLEEHQQMIERIGVTRQRQAGFKRAV  165 (205)
Q Consensus       134 ---~~~----------~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v  165 (205)
                         +++          .|-|++.+.|..||.     -|.|+....
T Consensus       254 ~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~-----GR~~~~~~~  293 (305)
T d2bmfa2         254 PVILTDGEERVILAGPMPVTHSSAAQRRGRV-----GRNPKNEND  293 (305)
T ss_dssp             EEEECSSSCEEEEEEEEECCHHHHHHHHTTS-----SCSSSCCCE
T ss_pred             EEEECCCCCCEEEECCCCCCHHHHHHHHCCC-----CCCCCCCEE
T ss_conf             6573389876388044569988983241186-----828999269


No 21 
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=96.94  E-value=0.0017  Score=36.40  Aligned_cols=111  Identities=17%  Similarity=0.127  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf             72343349999861--4899711057899999998765304778--------2348999999727898699972144323
Q gi|254780130|r   52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGH  121 (205)
Q Consensus        52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~  121 (205)
                      ...|++++.+-+.+  ..|+||+|++...+.-+.|...|.....        ...++..+-...-....|.+++ ..||-
T Consensus        16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~Ag~~g~VtIAT-NmAGR   94 (175)
T d1tf5a4          16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIAT-NMAGR   94 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEE-TTSST
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEHH-HHHHC
T ss_conf             99999999999999996599889996819999999999997599712210226899888887513798166445-58870


Q ss_pred             HHH-------HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             322-------43206758972689998880225555766654202657753999
Q gi|254780130|r  122 GLN-------LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY  168 (205)
Q Consensus       122 Gln-------L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~  168 (205)
                      |.+       .+.+.=+||.-.++-|.-...|..||.     -|-|..-....|
T Consensus        95 GtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~-----gRQGdpGs~~~~  143 (175)
T d1tf5a4          95 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRS-----GRQGDPGITQFY  143 (175)
T ss_dssp             TCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTS-----SGGGCCEEEEEE
T ss_pred             CCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHCCH-----HHHCCCCCCEEE
T ss_conf             8875663889857985899840485266788884234-----420787451899


No 22 
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=95.54  E-value=0.0094  Score=32.24  Aligned_cols=93  Identities=12%  Similarity=-0.012  Sum_probs=56.1

Q ss_pred             HHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC----H--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf             998614899711057899999998765304778----2--3489999997278986999721443233224320675897
Q gi|254780130|r   61 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----L--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF  134 (205)
Q Consensus        61 ~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~~----~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~  134 (205)
                      +.+.+. +.+++||+.-..+.+.+.+.|.+...    .  .......+.+.+++.++++++ ..++.|+|+ . ..+||.
T Consensus        30 ~~i~~~-~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t-~~~~~~~~~-~-~~~vid  105 (299)
T d1yksa2          30 DWILAD-KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILAT-DIAEMGANL-C-VERVLD  105 (299)
T ss_dssp             HHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEES-SSTTCCTTC-C-CSEEEE
T ss_pred             HHHHHC-CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEEEE-CHHHHCEEC-C-CEEEEE
T ss_conf             999755-998999949999999999999866980999768675767766515776789970-036536412-7-338986


Q ss_pred             E---------CC----------CCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             2---------68----------9998880225555766654202657
Q gi|254780130|r  135 F---------SL----------WWDLEEHQQMIERIGVTRQRQAGFK  162 (205)
Q Consensus       135 ~---------~~----------~~n~~~~~Qa~~Ri~~~r~hR~GQ~  162 (205)
                      .         ++          +.+.+...|..||.     -|.+-.
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~-----gr~~~~  147 (299)
T d1yksa2         106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRI-----GRNPNR  147 (299)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTS-----SCCTTC
T ss_pred             CCCEECEEEECCCCCEEEEEEEECCHHHHHHHCCCC-----CCCCCC
T ss_conf             685000035658788268732426899999864666-----666788


No 23 
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=93.38  E-value=0.2  Score=24.96  Aligned_cols=138  Identities=15%  Similarity=0.185  Sum_probs=83.1

Q ss_pred             CCCCCCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECH
Q ss_conf             5420572343349999861--4899711057899999998765304778--------23489999997278986999721
Q gi|254780130|r   47 HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHP  116 (205)
Q Consensus        47 ~~~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~  116 (205)
                      .+......|++++.+-+.+  ..|+||+|.+...+.=+.|...|.....        ...++..+=..---.-.|.+++-
T Consensus        11 ~Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAeIIAqAG~~GaVTIATN   90 (219)
T d1nkta4          11 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATN   90 (219)
T ss_dssp             EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTCEEEEET
T ss_pred             EEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             07747899999999999999966998899617599999999999872534322410468888899996466883796200


Q ss_pred             HHHHHHHHHHH---------------------------------------------------HCCEEEEECCCCCHHHHH
Q ss_conf             44323322432---------------------------------------------------067589726899988802
Q gi|254780130|r  117 ASCGHGLNLQY---------------------------------------------------GGNILVFFSLWWDLEEHQ  145 (205)
Q Consensus       117 ~a~g~GlnL~~---------------------------------------------------a~~~vI~~~~~~n~~~~~  145 (205)
                       .||-|.+..-                                                   +.=+||--+..-|     
T Consensus        91 -MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeS-----  164 (219)
T d1nkta4          91 -MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHES-----  164 (219)
T ss_dssp             -TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSS-----
T ss_pred             -CCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----
T ss_conf             -04787764646860155677765414673128789999998777888998887777777449967984255665-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2555576665420265775399999838895899999999999999999999
Q gi|254780130|r  146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA  197 (205)
Q Consensus       146 Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~  197 (205)
                      -++|++.|+|+-|=|..-....|  +   |.|..+++.-...+  ...+|..
T Consensus       165 rRIDnQLRGRsGRQGDPGsSrFf--l---SLeDdLmr~F~~~~--i~~lm~~  209 (219)
T d1nkta4         165 RRIDNQLRGRSGRQGDPGESRFY--L---SLGDELMRRFNGAA--LETLLTR  209 (219)
T ss_dssp             HHHHHHHHHTSSGGGCCEEEEEE--E---ETTSHHHHHTTHHH--HHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEE--E---ECCHHHHHHHCHHH--HHHHHHH
T ss_conf             55553302666456897512567--7---44679999878399--9999997


No 24 
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=31.24  E-value=9.7  Score=15.57  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHH
Q ss_conf             5897268999888022555576
Q gi|254780130|r  131 ILVFFSLWWDLEEHQQMIERIG  152 (205)
Q Consensus       131 ~vI~~~~~~n~~~~~Qa~~Ri~  152 (205)
                      -+||+||||+...+.+....+.
T Consensus       117 DlIFlDPPY~~~~~~~~l~~l~  138 (183)
T d2ifta1         117 DVVFLDPPFHFNLAEQAISLLC  138 (183)
T ss_dssp             EEEEECCCSSSCHHHHHHHHHH
T ss_pred             CEEEECHHHHHHHHHHHHHHHH
T ss_conf             3788640675335999999888


No 25 
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=24.54  E-value=18  Score=14.04  Aligned_cols=49  Identities=12%  Similarity=0.205  Sum_probs=31.1

Q ss_pred             CCCCCEEEECHHHHHHHHH--HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7898699972144323322--432067589726899988802255557666542026
Q gi|254780130|r  106 EGKIPLLFAHPASCGHGLN--LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG  160 (205)
Q Consensus       106 ~~~~~Vll~~~~a~g~Gln--L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G  160 (205)
                      ..+.+|+++|......-..  ++.+++  -|+.-|+++....+++.++.    .|.|
T Consensus        77 ~~~~piI~lt~~~~~~~~~~a~~~G~~--~~l~KP~~~~~L~~~l~~~l----~r~~  127 (128)
T d1jbea_          77 MSALPVLMVTAEAKKENIIAAAQAGAS--GYVVKPFTAATLEEKLNKIF----EKLG  127 (128)
T ss_dssp             CTTCCEEEEESSCCHHHHHHHHHTTCS--EEEESSCCHHHHHHHHHHHH----HHHT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHCCCC--EEEECCCCHHHHHHHHHHHH----HHCC
T ss_conf             789968999776999999999987998--89989899999999999999----8749


No 26 
>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}
Probab=24.29  E-value=15  Score=14.50  Aligned_cols=22  Identities=14%  Similarity=0.105  Sum_probs=18.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHH
Q ss_conf             5897268999888022555576
Q gi|254780130|r  131 ILVFFSLWWDLEEHQQMIERIG  152 (205)
Q Consensus       131 ~vI~~~~~~n~~~~~Qa~~Ri~  152 (205)
                      -+||+||||....+.+....+.
T Consensus       113 DlIf~DPPY~~~~~~~~l~~l~  134 (183)
T d2fpoa1         113 NIVFVDPPFRRGLLEETINLLE  134 (183)
T ss_dssp             EEEEECCSSSTTTHHHHHHHHH
T ss_pred             CEEEECCCCCCCHHHHHHHHHH
T ss_conf             7899827443563999999999


Done!