RPSBLAST alignment of GI: 254780130 and protein with PDBid: 3dmq

>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968

 Score = 74.6 bits (182), Expect = 2e-14
 Identities = 21/192 (10%), Positives = 58/192 (30%), Gaps = 18/192 (9%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           Q +    + G      ++  +    L        ++ +       D +++ L   +    
Sbjct: 443 QYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHR 502

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW--NEGKIPLLFAH 115
           +  ++V     +   +L++   +                +      W   E     +   
Sbjct: 503 SQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                 G N Q   + +V F L ++ +  +Q I R+   R  Q      + ++    + T
Sbjct: 563 SEIGSEGRNFQ-FASHMVMFDLPFNPDLLEQRIGRLD--RIGQ---AHDIQIHVPYLEKT 616

Query: 176 IDELVLQRLRTK 187
              ++++     
Sbjct: 617 AQSVLVRWYHEG 628