Query gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 119
No_of_seqs 121 out of 1551
Neff 3.6
Searched_HMMs 33803
Date Sun May 22 10:02:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780131.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1zau_A DNA ligase; AMP; HET: 99.8 1.4E-18 4.2E-23 134.4 7.4 68 48-115 2-69 (69)
2 >2owo_A DNA ligase; protein/DN 99.7 1.6E-17 4.8E-22 128.0 6.5 58 58-115 3-60 (180)
3 >3czp_A Putative polyphosphate 54.5 16 0.00048 18.0 3.8 42 44-85 6-47 (245)
4 >3czp_A Putative polyphosphate 50.5 18 0.00054 17.7 3.5 41 45-85 4-45 (255)
5 >3czq_A Putative polyphosphate 36.8 33 0.00098 16.1 3.7 37 49-85 18-54 (270)
6 >2wvr_C DNA replication factor 29.2 13 0.00039 18.6 0.0 82 13-103 458-542 (546)
7 >2cvx_A Ribonucleoside-diphosp 28.9 36 0.0011 16.0 2.1 24 79-102 19-42 (45)
8 >1uxy_A MURB, uridine diphosph 17.7 73 0.0022 14.0 1.9 21 81-108 7-27 (49)
9 >2bo9_A Carboxypeptidase A4; m 17.1 58 0.0017 14.7 1.3 12 86-97 214-225 (308)
10 >3i99_A UDP-N-acetylenolpyruvo 16.1 82 0.0024 13.7 1.9 21 81-108 7-27 (38)
No 1
>>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} (A:1-69)
Probab=99.76 E-value=1.4e-18 Score=134.41 Aligned_cols=68 Identities=31% Similarity=0.452 Sum_probs=66.6
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 47777789999999999999999999997544589856989999999999999997874268989735
Q gi|254780131|r 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115 (119)
Q Consensus 48 ak~v~~Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~ISD~EYD~L~~eL~~LE~~~PeL~~~dSPT~ 115 (119)
++++.+|++.+++.++..|+++|.+|+++||++|+|+|||++||+|+++|..||.+||+|+.+|||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~L~~~i~~~~~~YY~~~~p~isD~~YD~l~~eL~~lE~~~P~l~~~dSPTq 69 (69)
T 1zau_A 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQ 69 (69)
T ss_dssp ------CCHHHHHTTHHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHHHHHHTSSTTCCTTCTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98864527299999999999999999999864899979889999999999999986901026898530
No 2
>>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:1-60,A:117-236)
Probab=99.71 E-value=1.6e-17 Score=127.98 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999999999999999997544589856989999999999999997874268989735
Q gi|254780131|r 58 EAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115 (119)
Q Consensus 58 EA~~eie~L~k~I~~Hn~~YY~~D~P~ISD~EYD~L~~eL~~LE~~~PeL~~~dSPT~ 115 (119)
+++.++++|++.|.+|++.||++|+|+|||++||+|+++|.+||++||+|+.+|||||
T Consensus 3 ~~~~~i~~L~~~l~~~~~~YY~ld~P~isD~~YD~l~~eL~~LE~~~P~l~~~dSPTq 60 (180)
T 2owo_A 3 SIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ 60 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHHHHHHCTTSCCTTSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7999999999999999998644999888889999999999999986814468999966
No 3
>>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural genomics, protein structure initiative; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} (A:256-500)
Probab=54.51 E-value=16 Score=18.01 Aligned_cols=42 Identities=12% Similarity=-0.138 Sum_probs=35.4
Q ss_pred HHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 862147777789999999999999999999997544589856
Q gi|254780131|r 44 WLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLF 85 (119)
Q Consensus 44 ~m~kak~v~~Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~I 85 (119)
.+.....-..|+|++.+.+++.|...|..-+...+..+.|+|
T Consensus 6 ml~~~~~~~~~~k~e~~~~l~~L~~~L~~lQ~~l~~~~~pvi 47 (245)
T 3czp_A 6 LLDSLDLGQYLDKDAYKEQLAAEQARLAGLIRDKRFRQHSLV 47 (245)
T ss_dssp HHHTCCTTCCCCHHHHHHHHHHHHHHHHHHHHSGGGGGCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 101479877889999999999999999999999997698099
No 4
>>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural genomics, protein structure initiative; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} (A:1-255)
Probab=50.50 E-value=18 Score=17.73 Aligned_cols=41 Identities=20% Similarity=0.058 Sum_probs=32.2
Q ss_pred HHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 6214777778999999999999999999999754458-9856
Q gi|254780131|r 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLD-DPLF 85 (119)
Q Consensus 45 m~kak~v~~Lsk~EA~~eie~L~k~I~~Hn~~YY~~D-~P~I 85 (119)
++....-..|+|++.+.+++.|...|...+...+..+ -|+|
T Consensus 4 l~~~d~~~~~~k~e~~~~l~~l~~~L~~lQ~~l~~~~k~~vl 45 (255)
T 3czp_A 4 FESAEVGHSIDKDTYEKAVIELREALLEAQFELKQQARFPVI 45 (255)
T ss_dssp GGGGGSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_pred CHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 000114798999999999999999999999999974996499
No 5
>>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, protein structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti 1021} (A:35-304)
Probab=36.84 E-value=33 Score=16.13 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=32.2
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7777789999999999999999999997544589856
Q gi|254780131|r 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLF 85 (119)
Q Consensus 49 k~v~~Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~I 85 (119)
..-..+++++.+.+++.|...+..-+...|..+-|+|
T Consensus 18 ~~~~~~~k~e~k~~l~~l~~~L~~lQ~~l~~~~~~vl 54 (270)
T 3czq_A 18 PYKKKLDREEYEETLTKLQIELVKVQFWXQATGKRVX 54 (270)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 8434589999999999999999999999997599689
No 6
>>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:)
Probab=29.19 E-value=13 Score=18.55 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=48.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CHHH
Q ss_conf 1320075899989986441652455221689862147777789999999999999999999997544589856---9899
Q gi|254780131|r 13 FENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLF---TDGL 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~kak~v~~Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~I---SD~E 89 (119)
+.--+.|...+.+..++++....+ -....-..++.+|++.-|+.|.+++-.|=..=-..+.-.+ .|..
T Consensus 458 ~~il~~~~~~~~~~~~~~~~~~~~---------i~~s~~~~~~~~e~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 528 (546)
T 2wvr_C 458 ARVLRSVFVSERKPALSMEVACAR---------MVGSCCTIMSPGEMEKHLLLLSELLPDWLSLHRIRTDTYVKLDKAAD 528 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHH---------HHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC
T ss_conf 999999997537775079999999---------99854576999999999999998687206998627945899602179
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999997
Q gi|254780131|r 90 YDRVSERLDALQEQ 103 (119)
Q Consensus 90 YD~L~~eL~~LE~~ 103 (119)
.+.++.+|.++.++
T Consensus 529 ~~~~~~~~~~~~~~ 542 (546)
T 2wvr_C 529 LAHITARLAHQTRA 542 (546)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999766
No 7
>>2cvx_A Ribonucleoside-diphosphate reductase large chain 1; eukaryotic, ribonucleotide reductase, DNTP regulation, oxidoreductase; HET: DGT ADP; 2.20A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* (A:92-136)
Probab=28.95 E-value=36 Score=15.95 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=18.4
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 458985698999999999999999
Q gi|254780131|r 79 RLDDPLFTDGLYDRVSERLDALQE 102 (119)
Q Consensus 79 ~~D~P~ISD~EYD~L~~eL~~LE~ 102 (119)
+..+|.|||..|+-..+--..|..
T Consensus 19 g~~aPlISdevy~iV~~nad~Lns 42 (45)
T 2cvx_A 19 GKPAPMISDDVYNIVMENKDKLNS 42 (45)
T ss_dssp TEECCSSCHHHHHHHHTTHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 433343048999888872999997
No 8
>>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:224-272)
Probab=17.72 E-value=73 Score=14.05 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=15.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8985698999999999999999787426
Q gi|254780131|r 81 DDPLFTDGLYDRVSERLDALQEQFPELF 108 (119)
Q Consensus 81 D~P~ISD~EYD~L~~eL~~LE~~~PeL~ 108 (119)
-+|+|+...|+.|.. +||++.
T Consensus 7 kNPiv~~~~~~~L~~-------~~p~~p 27 (49)
T 1uxy_A 7 KNPVVSAETAKALLS-------QFPTAP 27 (49)
T ss_dssp CCCEECHHHHHHHHH-------HSTTCC
T ss_pred ECCCCCHHHHHHHHH-------HCCCCC
T ss_conf 314431779999887-------577788
No 9
>>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} (A:)
Probab=17.13 E-value=58 Score=14.67 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=4.3
Q ss_pred CHHHHHHHHHHH
Q ss_conf 989999999999
Q gi|254780131|r 86 TDGLYDRVSERL 97 (119)
Q Consensus 86 SD~EYD~L~~eL 97 (119)
...++..+.+.+
T Consensus 214 ~~~~~~~~~~~~ 225 (308)
T 2bo9_A 214 DAEELDKVARLA 225 (308)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 989999999999
No 10
>>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:239-276)
Probab=16.11 E-value=82 Score=13.72 Aligned_cols=21 Identities=14% Similarity=0.570 Sum_probs=15.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8985698999999999999999787426
Q gi|254780131|r 81 DDPLFTDGLYDRVSERLDALQEQFPELF 108 (119)
Q Consensus 81 D~P~ISD~EYD~L~~eL~~LE~~~PeL~ 108 (119)
-+|+|+-..|++|.. +||++.
T Consensus 7 KNPiV~~~~~~~L~~-------~~p~~p 27 (38)
T 3i99_A 7 KNPVISQQAFARLQI-------EHPDVV 27 (38)
T ss_dssp CCCEECHHHHHHHHH-------HCTTCC
T ss_pred CCCCCHHHHHHHHHH-------HCCCCC
T ss_conf 255423889987533-------077664
Done!