HHsearch alignment for GI: 254780132 and conserved domain: PRK03731
>PRK03731 aroL shikimate kinase II; Reviewed.
Probab=98.18 E-value=1.2e-05 Score=55.14 Aligned_cols=148 Identities=16% Similarity=0.139 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE--ECCC----CCC-CCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEE
Q ss_conf 9719999879999989999999851898179986--0278----889-88334642010014554221027818766661
Q gi|254780132|r 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVG--VTTR----RPR-VDEKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (186)
Q Consensus 1 m~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~--~TTR----~~R-~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~ 73 (186)
T Consensus 1 M~~~I~LiG~mGsGKstiGk~LA~~L-~~~fiD~D~~Ie~~~g~sI~eif~~~Ge~-------~FR~~E~--~~l~~--l 68 (172)
T PRK03731 1 MTQPLFLVGPRGCGKTTVGMALAQAL-GYRFVDTDLWLQSTLQMTVAEIVEREGWA-------GFRARES--AALEA--V 68 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHHHHCCCHHHHHHHHCHH-------HHHHHHH--HHHHH--H
T ss_conf 99988998899998899999999985-99979786999988398999999983989-------9999999--99998--4
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEHCCCCCHHHHHHHHHH------C----CCCCHHHH
Q ss_conf 2870454422002334310242002542000244420543200000023218999987620------1----45448999
Q gi|254780132|r 74 RDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK------R----REDIPFNL 143 (186)
Q Consensus 74 ~g~~YGts~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~------R----~~e~~~~i 143 (186)
T Consensus 69 ------~~~---~~VIstGGG~v~--~~~n~~~L~~----~g~vv~L~~-~~~~l~~Rl~~~~~~~~RPll~~~~~~~~i 132 (172)
T PRK03731 69 ------TAP---STVVATGGGIIL--TEENRAFMRN----NGIVIYLCA-PVSVLANRLEADPEEDQRPTLTGKPLSEEV 132 (172)
T ss_pred ------CCC---CEEEEECCCCCC--CHHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf ------278---828980786426--8999999996----899999979-999999998138778989878899879999
Q ss_pred HH----HHHHHHHCCCEEEECC-CHHHHHHHHHHHHHHHHH
Q ss_conf 99----9998653598899939-789999999999999973
Q gi|254780132|r 144 DP----DLFGKNHSYSFTIVNN-HLPTACRQVGLIREFVKR 179 (186)
Q Consensus 144 ~~----r~~~~~~~fD~iIiNd-dle~a~~~l~~Iie~l~~ 179 (186)
T Consensus 133 ~~l~~~R~~~Y~~~a~~ii~~~~~~~~i~~~---Il~~L~e 170 (172)
T PRK03731 133 AEVLAERDALYREVAHHIIDATQPPSQVVSE---ILSALAQ 170 (172)
T ss_pred HHHHHHHHHHHHHHCCEEECCCCCHHHHHHH---HHHHHHH
T ss_conf 9999999999998489988798999999999---9998732