HHsearch alignment for GI: 254780132 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=97.76 E-value=0.00041 Score=45.78 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=56.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEE---EEECCCCCCCCCCCCCCHHHCCHHH-HHHHH-CCCEEEEEEEECCCE
Q ss_conf 199998799999899999998518981799---8602788898833464201001455-42210-278187666612870
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMP---VGVTTRRPRVDEKQYIDYRFISQSQ-FKGWK-HTGLFIETTKVRDEY 77 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~---v~~TTR~~R~~E~~g~dY~Fvs~~~-F~~~i-~~~~FiE~~~~~g~~ 77 (186)
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~g-~~viElNAS-D~R~~-----~~I~-~~i~~~~~~~sl~~~~~KlIIlDEvD~l~ 112 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDYG-WEVIELNAS-DQRTK-----DVIE-RVAGEASTSGSLFGAKRKLILLDEVDGIH 112 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CCEEEECCC-CCCCH-----HHHH-HHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 4699889399879999999999849-985997710-11478-----9999-99998760688778873499963434457
Q ss_pred ----EEEECCCHHHHHHHCCCCC-CCC-CCCH--HHHHHHCCCCCEEEEHCCCCCHHHHHHHHHH
Q ss_conf ----4544220023343102420-025-4200--0244420543200000023218999987620
Q gi|254780132|r 78 ----YGYLKEDINNPMEHGYDIL-LIL-THQG--LAPLKKLYEDQVTSIFIAPPSEAELIQRRIK 134 (186)
Q Consensus 78 ----YGts~~~i~~~~~~g~~~i-l~i-d~~G--~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~ 134 (186)
T Consensus 113 ~~~d~g-g~~al~~~ik~s~~PiIli~Nd~~~~~~~~lrs~----c~~i~F~~~~~~~I~~~L~~ 172 (403)
T PRK04195 113 GNADRG-GVRAILEIIKKAKNPIILTANDPYDPSLRPLRNA----CLMIEFKRLSKRSIVPVLKR 172 (403)
T ss_pred CHHHHH-HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH----HHHCCCCCCCHHHHHHHHHH
T ss_conf 244479-9999999985488708998268455671779976----61221799499999999999