HHsearch alignment for GI: 254780132 and conserved domain: PRK04195

>PRK04195 replication factor C large subunit; Provisional.
Probab=97.76  E-value=0.00041  Score=45.78  Aligned_cols=119  Identities=18%  Similarity=0.189  Sum_probs=56.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCEEEE---EEECCCCCCCCCCCCCCHHHCCHHH-HHHHH-CCCEEEEEEEECCCE
Q ss_conf             199998799999899999998518981799---8602788898833464201001455-42210-278187666612870
Q gi|254780132|r    3 HIFVLIGASGVGKTTIAKQVVLNSEYLVMP---VGVTTRRPRVDEKQYIDYRFISQSQ-FKGWK-HTGLFIETTKVRDEY   77 (186)
Q Consensus         3 kiivi~GpsGsGK~tl~~~L~~~~~~~~~~---v~~TTR~~R~~E~~g~dY~Fvs~~~-F~~~i-~~~~FiE~~~~~g~~   77 (186)
T Consensus        41 k~lLL~GPpGvGKTT~a~~lAk~~g-~~viElNAS-D~R~~-----~~I~-~~i~~~~~~~sl~~~~~KlIIlDEvD~l~  112 (403)
T PRK04195         41 KALLLYGPPGVGKTSLAHALANDYG-WEVIELNAS-DQRTK-----DVIE-RVAGEASTSGSLFGAKRKLILLDEVDGIH  112 (403)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC-CCEEEECCC-CCCCH-----HHHH-HHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf             4699889399879999999999849-985997710-11478-----9999-99998760688778873499963434457


Q ss_pred             ----EEEECCCHHHHHHHCCCCC-CCC-CCCH--HHHHHHCCCCCEEEEHCCCCCHHHHHHHHHH
Q ss_conf             ----4544220023343102420-025-4200--0244420543200000023218999987620
Q gi|254780132|r   78 ----YGYLKEDINNPMEHGYDIL-LIL-THQG--LAPLKKLYEDQVTSIFIAPPSEAELIQRRIK  134 (186)
Q Consensus        78 ----YGts~~~i~~~~~~g~~~i-l~i-d~~G--~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~  134 (186)
T Consensus       113 ~~~d~g-g~~al~~~ik~s~~PiIli~Nd~~~~~~~~lrs~----c~~i~F~~~~~~~I~~~L~~  172 (403)
T PRK04195        113 GNADRG-GVRAILEIIKKAKNPIILTANDPYDPSLRPLRNA----CLMIEFKRLSKRSIVPVLKR  172 (403)
T ss_pred             CHHHHH-HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH----HHHCCCCCCCHHHHHHHHHH
T ss_conf             244479-9999999985488708998268455671779976----61221799499999999999