HHsearch alignment for GI: 254780132 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=97.89 E-value=9.3e-06 Score=55.71 Aligned_cols=84 Identities=18% Similarity=0.115 Sum_probs=45.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEECC
Q ss_conf 99987999998999999985189817998602788-89883346420100145542210278187666612870454422
Q gi|254780132|r 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRR-PRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (186)
Q Consensus 5 ivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~-~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts~~ 83 (186)
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~-~ip~~--~LD~l~w~p~w---~~---~~~~e~~~~~~~~~~~~~WIiDGny~~~~~~ 73 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHY-NCPVL--HLDQLHFSSNW---QE---RDDDDMIADISNFLLKQDWIIEGNYSNCLYE 73 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEE--EECCEEECCCC---EE---CCHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf 9998899986899999999987-97979--70227888999---88---8899999999999848987994785124777
Q ss_pred CHHHHHHHCCCCCCCC
Q ss_conf 0023343102420025
Q gi|254780132|r 84 DINNPMEHGYDILLIL 99 (186)
Q Consensus 84 ~i~~~~~~g~~~il~i 99 (186)
T Consensus 74 --~rl~~aD~iI~Ld~ 87 (171)
T PRK07261 74 --ERMAEADQIIFLNF 87 (171)
T ss_pred --HHHHHCCEEEEECC
T ss_conf --67977999999858