HHsearch alignment for GI: 254780132 and conserved domain: PRK12338
>PRK12338 hypothetical protein; Provisional.
Probab=97.56 E-value=0.00025 Score=47.09 Aligned_cols=162 Identities=22% Similarity=0.271 Sum_probs=72.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHH-----------HHHHHCCCEEEEEE-
Q ss_conf 999987999998999999985189817998602788898833464201001455-----------42210278187666-
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQ-----------FKGWKHTGLFIETT- 71 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~-----------F~~~i~~~~FiE~~- 71 (186)
T Consensus 6 iILiGGtSGvGKSTlAseLAsRL-gI~tvIsTDs--IRe-----vmR~~is~e~~P~L~~STY~A~~~Lr~~~~~~~~~~ 77 (320)
T PRK12338 6 VILIGSASGIGKSTIASEVARRL-NIKHLIETDF--IRE-----VVRGIIGKEYAPALHMSSYNAYTALRDKDHFVPKRF 77 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCEEECCHH--HHH-----HHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 99970688876888999999851-9871103347--999-----999833804153455420267887267423577411
Q ss_pred ---EECCC-----EEEEECC-CHHHHHHHCCCCCCC---CCCCHHHHHHHCC--CCCEEEEHCCCCCHHHHHHHHHHCCC
Q ss_conf ---61287-----0454422-002334310242002---5420002444205--43200000023218999987620145
Q gi|254780132|r 72 ---KVRDE-----YYGYLKE-DINNPMEHGYDILLI---LTHQGLAPLKKLY--EDQVTSIFIAPPSEAELIQRRIKRRE 137 (186)
Q Consensus 72 ---~~~g~-----~YGts~~-~i~~~~~~g~~~il~---id~~G~~~lk~~~--~~~~~~IfI~pps~~~L~~RL~~R~~ 137 (186)
T Consensus 78 ~~~vi~Gfe~q~e~V~~~le~vI~r~~~~~~sivIEGVHLvP-gfi~~~~~~~~~~i~F~i~~~--~E~kH~eRF~~Rak 154 (320)
T PRK12338 78 EELVIAGFEEHASFVIPAIEKVIKRAVTDADDIVIEGVHLVP-GLINIEQFYEYANIHFFILYA--DEEEHKERFVKRAM 154 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECH-HHCCHHHHCCCCCCEEEEEEC--CHHHHHHHHHHHHH
T ss_conf 678999999998999999999999998648867998453055-550576622666636999981--76899999999998
Q ss_pred CCHH------------HHHHHHHHHHHCCCE-EEECCCHHHHHHHHHH-HHHH
Q ss_conf 4489------------999999986535988-9993978999999999-9999
Q gi|254780132|r 138 DIPF------------NLDPDLFGKNHSYSF-TIVNNHLPTACRQVGL-IREF 176 (186)
Q Consensus 138 e~~~------------~i~~r~~~~~~~fD~-iIiNddle~a~~~l~~-Iie~ 176 (186)
T Consensus 155 ~m~r~~Kyvkyf~niR~Iqd~L~~~Adeh~iP~I~N~nid~sV~~i~~~I~~~ 207 (320)
T PRK12338 155 EIKRGGKHLEYFRENRIIHDFLVSQADEHGIPVIKNDDIDRTVSKVLSVIREV 207 (320)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 85026508999998899999998416761997304763556899999999987