HHsearch alignment for GI: 254780132 and conserved domain: PRK13974
>PRK13974 thymidylate kinase; Provisional.
Probab=98.24 E-value=2.8e-06 Score=58.87 Aligned_cols=171 Identities=16% Similarity=0.111 Sum_probs=77.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC--CE--EEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCE
Q ss_conf 71999987999998999999985189--81--799860278889883346420100145542210278187666612870
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE--YL--VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEY 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~--~~--~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~ 77 (186)
T Consensus 3 G~fIv~EGiDGsGKsTq~~~L~~~L~~~g~~~~~~~~~~~rePg~t~~-g~~---ir-~~l~~~~~~~~~~~~~e~--lL 75 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLL-GKS---LR-ELLLDTSKDNSPSPLAEL--LL 75 (212)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCH-HHH---HH-HHHHCCCCCCCCCHHHHH--HH
T ss_conf 419998899999899999999999986587535861577149999806-999---99-998066545688879999--99
Q ss_pred EEEE-----CCCHHHHHHHCCCCCCCCC------CCH---------HHHHHHCCC--CCE-EEEHCCCCCHHHHHHHHHH
Q ss_conf 4544-----2200233431024200254------200---------024442054--320-0000023218999987620
Q gi|254780132|r 78 YGYL-----KEDINNPMEHGYDILLILT------HQG---------LAPLKKLYE--DQV-TSIFIAPPSEAELIQRRIK 134 (186)
Q Consensus 78 YGts-----~~~i~~~~~~g~~~il~id------~~G---------~~~lk~~~~--~~~-~~IfI~pps~~~L~~RL~~ 134 (186)
T Consensus 76 f~AdR~e~~~~~I~paL~~G~iVI~DRY~~St~AYQg~~~g~~~~~i~~l~~~~~~~~~PDlt~~LDv~-~e~a~~R~~~ 154 (212)
T PRK13974 76 YAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEIS-VEESIRRRKN 154 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC-HHHHHHHHHC
T ss_conf 999999999999999983799999788323599998862699999999999987479999989997697-5889998847
Q ss_pred CCCCCH--------HHHHHHHHHHHHCCCEEEEC--CCHHHHHHHHHH-HHHHHHHC
Q ss_conf 145448--------99999999865359889993--978999999999-99999730
Q gi|254780132|r 135 RREDIP--------FNLDPDLFGKNHSYSFTIVN--NHLPTACRQVGL-IREFVKRG 180 (186)
Q Consensus 135 R~~e~~--------~~i~~r~~~~~~~fD~iIiN--ddle~a~~~l~~-Iie~l~~~ 180 (186)
T Consensus 155 ~~~dr~e~e~~~f~~kVr~~y~~la~~~~~~~IDa~~~ieeV~~~I~~~i~~~~~~~ 211 (212)
T PRK13974 155 RKPDRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSNK 211 (212)
T ss_pred CCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 763431016199999999999998473987999899999999999999999997347