HHsearch alignment for GI: 254780132 and conserved domain: TIGR00174
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=96.95 E-value=0.00036 Score=46.15 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=51.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-E--------EEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEEC
Q ss_conf 9999879999989999999851898-1--------799860278889883346420100145542210278187666612
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEY-L--------VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVR 74 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~-~--------~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~ 74 (186)
T Consensus 1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Di------------ldp~e~y 68 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDI------------LDPSESY 68 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEEC------------CCCCCCC
T ss_conf 9677408855477899998876895787435023223787535788968753498158513------------4712003
Q ss_pred --CCEEEEECCCHHHHHHHCCCCCCC
Q ss_conf --870454422002334310242002
Q gi|254780132|r 75 --DEYYGYLKEDINNPMEHGYDILLI 98 (186)
Q Consensus 75 --g~~YGts~~~i~~~~~~g~~~il~ 98 (186)
T Consensus 69 ~~~~F~~~~~~~~~~i~~~Gkipl~V 94 (307)
T TIGR00174 69 SAADFQTQALNAIADITARGKIPLLV 94 (307)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 70889999999999998569834886