HHsearch alignment for GI: 254780132 and conserved domain: TIGR00618

>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=96.73  E-value=0.0012  Score=42.90  Aligned_cols=21  Identities=33%  Similarity=0.773  Sum_probs=19.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHH
Q ss_conf             199998799999899999998
Q gi|254780132|r    3 HIFVLIGASGVGKTTIAKQVV   23 (186)
Q Consensus         3 kiivi~GpsGsGK~tl~~~L~   23 (186)
T Consensus        31 ~~f~i~G~tGAGKtsLldAI~   51 (1063)
T TIGR00618        31 KLFVICGKTGAGKTSLLDAIT   51 (1063)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
T ss_conf             736777889983545999999