HHsearch alignment for GI: 254780132 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.56 E-value=7.2e-05 Score=50.34 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=33.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHH
Q ss_conf 719999879999989999999851898179986027888988334642010014554
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQF 58 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F 58 (186)
T Consensus 356 Ge~laIIGPSgSGKStLaR~~vG~W~~~~G~VR----------LDGadl~qWD~e~l 402 (556)
T TIGR01842 356 GEALAIIGPSGSGKSTLARILVGIWPPASGSVR----------LDGADLKQWDRETL 402 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE----------EEHHHHHCCCHHHC
T ss_conf 745888747865258898788721013565336----------40334402375365