HHsearch alignment for GI: 254780132 and conserved domain: TIGR02533
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.51 E-value=0.002 Score=41.62 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=53.1
Q ss_pred EEEEECCCCCCHHH-HHHHHHHH-CC--CEEEEEEECCCCCCCCCCCCCCHHH--CCHHHHHHHHCCCEEEEEEEECCCE
Q ss_conf 99998799999899-99999851-89--8179986027888988334642010--0145542210278187666612870
Q gi|254780132|r 4 IFVLIGASGVGKTT-IAKQVVLN-SE--YLVMPVGVTTRRPRVDEKQYIDYRF--ISQSQFKGWKHTGLFIETTKVRDEY 77 (186)
Q Consensus 4 iivi~GpsGsGK~t-l~~~L~~~-~~--~~~~~v~~TTR~~R~~E~~g~dY~F--vs~~~F~~~i~~~~FiE~~~~~g~~ 77 (186)
T Consensus 247 IiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTv------------EDPVEY~i~GIgQ~Qvn~kIgl-------TF---- 303 (495)
T TIGR02533 247 IILVTGPTGSGKTTTLYAALSRLNTPERNILTV------------EDPVEYQIEGIGQIQVNPKIGL-------TF---- 303 (495)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEE------------ECCEEEEECCCCEEEECCCCCH-------HH----
T ss_conf 188417789852588999998635899715686------------5782476248763651465430-------38----
Q ss_pred EEEECCCHHHHHHHCCCCCCC-------------------------CCCCHH-HHHHHCCCCCEEEEHCCCCC-HHHHHH
Q ss_conf 454422002334310242002-------------------------542000-24442054320000002321-899998
Q gi|254780132|r 78 YGYLKEDINNPMEHGYDILLI-------------------------LTHQGL-APLKKLYEDQVTSIFIAPPS-EAELIQ 130 (186)
Q Consensus 78 YGts~~~i~~~~~~g~~~il~-------------------------id~~G~-~~lk~~~~~~~~~IfI~pps-~~~L~~ 130 (186)
T Consensus 304 ----A~GLRaILRQDPDiiMvGEIRD~ETA~IAiQASLTGHLVLSTLHTNDAAgAvtRL~DMGvEPFL~a-Ssl~GVLAQ 378 (495)
T TIGR02533 304 ----AAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLA-SSLLGVLAQ 378 (495)
T ss_pred ----HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHH
T ss_conf ----888788642799889982316068999999876432576556554015446655532586404899-999999986
Q ss_pred HHHHC
Q ss_conf 76201
Q gi|254780132|r 131 RRIKR 135 (186)
Q Consensus 131 RL~~R 135 (186)
T Consensus 379 RLVRr 383 (495)
T TIGR02533 379 RLVRR 383 (495)
T ss_pred HHHHH
T ss_conf 33433