HHsearch alignment for GI: 254780132 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.16 E-value=0.0052 Score=39.09 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 1999987999998999999985189
Q gi|254780132|r 3 HIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 3 kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
T Consensus 39 ~~l~i~G~~GsGKTHLl~a~~~~~~ 63 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8699989999988999999999986