HHsearch alignment for GI: 254780132 and conserved domain: cd01131
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.38 E-value=0.0037 Score=39.96 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=54.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-E-EEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf 9999879999989999999851898-1-7998602788898833464201001455422102781876666128704544
Q gi|254780132|r 4 IFVLIGASGVGKTTIAKQVVLNSEY-L-VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (186)
Q Consensus 4 iivi~GpsGsGK~tl~~~L~~~~~~-~-~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts 81 (186)
T Consensus 3 liLitG~TGSGKTTtl~all~~i~~~~~~~Ii--TiE-------DPiE~~~~~~---------~~~i~q~e~-g~~~~sf 63 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHIL--TIE-------DPIEFVHESK---------RSLINQREV-GLDTLSF 63 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE--EEC-------CCHHHHCCCC---------CEEEEECCC-CCCCCCH
T ss_conf 89998999997999999999853637883699--964-------7377523676---------448873330-7886379
Q ss_pred CCCHHHHHHHCCCCCCCCCCCHHHH----HHHCCCCCEEEEHCCCCCHHHHHHHHHHCC
Q ss_conf 2200233431024200254200024----442054320000002321899998762014
Q gi|254780132|r 82 KEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRR 136 (186)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~ 136 (186)
T Consensus 64 ~~~lr~aLR~~PDvI~vGEiRd~et~~~al~aa~TGHlV~sTlHa~sa~~ai~Rl~~~~ 122 (198)
T cd01131 64 ENALKAALRQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf 99999998548885752777899999999999971993999767598999999999968