HHsearch alignment for GI: 254780132 and conserved domain: cd01131

>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.38  E-value=0.0037  Score=39.96  Aligned_cols=114  Identities=17%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC-E-EEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEECCCEEEEE
Q ss_conf             9999879999989999999851898-1-7998602788898833464201001455422102781876666128704544
Q gi|254780132|r    4 IFVLIGASGVGKTTIAKQVVLNSEY-L-VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL   81 (186)
Q Consensus         4 iivi~GpsGsGK~tl~~~L~~~~~~-~-~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i~~~~FiE~~~~~g~~YGts   81 (186)
T Consensus         3 liLitG~TGSGKTTtl~all~~i~~~~~~~Ii--TiE-------DPiE~~~~~~---------~~~i~q~e~-g~~~~sf   63 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHIL--TIE-------DPIEFVHESK---------RSLINQREV-GLDTLSF   63 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE--EEC-------CCHHHHCCCC---------CEEEEECCC-CCCCCCH
T ss_conf             89998999997999999999853637883699--964-------7377523676---------448873330-7886379


Q ss_pred             CCCHHHHHHHCCCCCCCCCCCHHHH----HHHCCCCCEEEEHCCCCCHHHHHHHHHHCC
Q ss_conf             2200233431024200254200024----442054320000002321899998762014
Q gi|254780132|r   82 KEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRR  136 (186)
Q Consensus        82 ~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~  136 (186)
T Consensus        64 ~~~lr~aLR~~PDvI~vGEiRd~et~~~al~aa~TGHlV~sTlHa~sa~~ai~Rl~~~~  122 (198)
T cd01131          64 ENALKAALRQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAKTIDRIIDVF  122 (198)
T ss_pred             HHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf             99999998548885752777899999999999971993999767598999999999968