HHsearch alignment for GI: 254780132 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.55 E-value=0.0023 Score=41.22 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
T Consensus 26 Gei~gliG~nGaGKSTL~~~i~Gl~ 50 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999899973999999996798